Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 1 (2004), Issue 6 (November)

1. Which is better for cDNA-microarray-based classification: ratios or direct intensities.
   Bioinformatics, 20(16): 2513-20. [Abstract] [Full-text]
2. A statistical framework for the design of microarray experiments and effective detection of differential gene expression.
   Bioinformatics, 20(16): 2821-8. [Abstract] [Full-text]
3. A mixture model for estimating the local false discovery rate in DNA microarray analysis.
   Bioinformatics, 20(16): 2694-701. [Abstract] [Full-text]
4. The Global Error Assessment (GEA) model for the selection of differentially expressed genes in microarray data.
   Bioinformatics, 20(16): 2726-37. [Abstract] [Full-text]
5. THEA: ontology-driven analysis of microarray data.
   Bioinformatics, 20(16): 2636-43. [Abstract] [Full-text]
6. A mixture model-based strategy for selecting sets of genes in multiclass response microarray experiments.
   Bioinformatics, 20(16): 2562-71. [Abstract] [Full-text]
7. Microarray analyses uncover UBE1L as a candidate target gene for lung cancer chemoprevention.
   Cancer Res, 64(21): 8109-15. [Abstract] [Full-text]
8. Custom chemical microarray production and affinity fingerprinting for the S1 pocket of factor VIIa.
   Anal Biochem, 335(1): 50-7. [Abstract] [Full-text]
9. Phenotypic and microarray gene expression analysis of tri-dimensional raft-modeled human head and neck squamous cell carcinoma.
   Otolaryngol Head Neck Surg, 131(5): 577-84. [Abstract] [Full-text]
10. Optimisation of a silicon/silicon dioxide substrate for a fluorescence DNA microarray.
    Biosens Bioelectron, 20(4): 797-806. [Abstract] [Full-text]
11. Virulence signatures: microarray-based approaches to discovery and analysis.
    Biosens Bioelectron, 20(4): 706-18. [Abstract] [Full-text]
12. Microarray method to monitor 40 intestinal bacterial species in the study of azo dye reduction.
    Biosens Bioelectron, 20(4): 699-705. [Abstract] [Full-text]
13. Multipathogen oligonucleotide microarray for environmental and biodefense applications.
    Biosens Bioelectron, 20(4): 684-98. [Abstract] [Full-text]
14. Oligonucleotide microarray for identification of Bacillus anthracis based on intergenic transcribed spacers in ribosomal DNA.
    FEMS Microbiol Lett, 240(2): 215-23. [Abstract] [Full-text]
15. Global analysis of the expression patterns of transcriptional regulatory factors in formation of embryoid bodies using sensitive oligonucleotide microarray systems.
    Biochem Biophys Res Commun, 325(1): 265-75. [Abstract] [Full-text]
16. Characterization of a novel Neisseria meningitidis Fur and iron-regulated operon required for protection from oxidative stress: utility of DNA microarray in the assignment of the biological role of hypothetical genes.
    Mol Microbiol, 54(4): 962-79. [Abstract] [Full-text]
17. Microarray-based comparative genomic hybridization and its applications in human genetics.
    Clin Genet, 66(6): 488-95. [Abstract] [Full-text]
18. Microarray analysis of gene expression in the rat vestibular nucleus complex following unilateral vestibular deafferentation.
    J Neurochem, 91(4): 975-82. [Abstract] [Full-text]
19. Selective discrimination of Listeria monocytogenes epidemic strains by a mixed-genome DNA microarray compared to discrimination by pulsed-field gel electrophoresis, ribotyping, and multilocus sequence typing.
    J Clin Microbiol, 42(11): 5270-6. [Abstract] [Full-text]
20. A virulence-associated gene microarray: a tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus.
    Microbiology, 150: 3763-71. [Abstract] [Full-text]
21. Protein microarray system for detecting protein-protein interactions using an anti-His-tag antibody and fluorescence scanning: effects of the heme redox state on protein-protein interactions of heme-regulated phosphodiesterase from Escherichia coli.
    Anal Chem, 76(22): 6521-7. [Abstract] [Full-text]
22. Tissue microarray detection of matrix metalloproteinases, in diseased tricuspid and bicuspid aortic valves with or without pathology of the ascending aorta.
    Eur J Cardiothorac Surg, 26(6): 1098-103. [Abstract] [Full-text]
23. Gene expression microarray technologies in the development of new therapeutic agents.
    Eur J Cancer, 40(17): 2560-91. [Abstract] [Full-text]
24. cDNA microarray analysis of rat alveolar epithelial cells following exposure to organic extract of diesel exhaust particles.
    Toxicol Appl Pharmacol, 201(2): 178-85. [Abstract] [Full-text]
25. DNA microarray technology: insights for oral and maxillofacial surgeons.
    Br J Oral Maxillofac Surg, 42(6): 542-5. [Abstract] [Full-text]
26. Reuse of imputed data in microarray analysis increases imputation efficiency.
    BMC Bioinformatics, 5: 160. [Abstract] [Full-text]
27. Dietary olive oil and menhaden oil mitigate induction of lipogenesis in hyperinsulinemic corpulent JCR:LA-cp rats: microarray analysis of lipid-related gene expression.
    Endocrinology, 145(12): 5847-61. [Abstract] [Full-text]
28. Clinical trial design for microarray predictive marker discovery and assessment.
    Ann Oncol, 15(12): 1731-7. [Abstract] [Full-text]
29. Enhancing the quality metric of protein microarray image.
    J Zhejiang Univ Sci, 5(12): 1621-8. [Abstract] [Full-text]
30. Microarray-based mutation analysis of the ABCA4 (ABCR) gene in autosomal recessive cone-rod dystrophy and retinitis pigmentosa.
    Eur J Hum Genet, 12(12): 1024-32. [Abstract] [Full-text]
31. DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFalpha, LPS, and cyclic stretch.
    Physiol Genomics, 19(3): 331-42. [Abstract] [Full-text]
32. A prototype antibody microarray platform to monitor changes in protein tyrosine phosphorylation.
    Mol Cell Proteomics, 3(11): 1102-18. [Abstract] [Full-text]
33. Microarray analysis of the failure of filtering blebs in a rat model of glaucoma filtering surgery.
    Invest Ophthalmol Vis Sci, 45(12): 4450-62. [Abstract] [Full-text]
34. Application of amplified RNA and evaluation of cRNA targets for spotted-oligonucleotide microarray.
    Biochem Biophys Res Commun, 325(4): 1346-52. [Abstract] [Full-text]
35. Normalization of microarray data using a spatial mixed model analysis which includes splines.
    Bioinformatics, 20(17): 3196-205. [Abstract] [Full-text]
36. Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction.
    Bioinformatics, 20(17): 3185-95. [Abstract] [Full-text]
37. Differences in gene expression between B-cell chronic lymphocytic leukemia and normal B cells: a meta-analysis of three microarray studies.
    Bioinformatics, 20(17): 3166-78. [Abstract] [Full-text]
38. Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes.
    Bioinformatics, 20(17): 3108-27. [Abstract] [Full-text]
39. Bayesian integrated functional analysis of microarray data.
    Bioinformatics, 20(17): 2943-53. [Abstract] [Full-text]
40. A spline function approach for detecting differentially expressed genes in microarray data analysis.
    Bioinformatics, 20(17): 2954-63. [Abstract] [Full-text]
41. Picky: oligo microarray design for large genomes.
    Bioinformatics, 20(17): 2893-902. [Abstract] [Full-text]
42. Java Treeview--extensible visualization of microarray data.
    Bioinformatics, 20(17): 3246-8. [Abstract] [Full-text]
43. Increased tissue microarray matrix metalloproteinase expression favors proteolysis in thoracic aortic aneurysms and dissections.
    Ann Thorac Surg, 78(6): 2106-10; discussion 2110-1. [Abstract] [Full-text]
44. Sample size for detecting differentially expressed genes in microarray experiments.
    BMC Genomics, 5(1): 87. [Abstract] [Full-text]
45. Analysis of ATP-binding cassette transporter expression in drug-selected cell lines by a microarray dedicated to multidrug resistance.
    Mol Pharmacol, 66(6): 1397-405. [Abstract] [Full-text]
46. Design of a real time quantitative PCR assay to assess global mRNA amplification of small size specimens for microarray hybridisation.
    J Clin Pathol, 57(12): 1278-87. [Abstract] [Full-text]
47. cDNA microarray-based identification of genes and pathways associated with oxaliplatin resistance.
    Cancer Chemother Pharmacol, 55(1): 1-11. [Abstract] [Full-text]
48. Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis.
    Theor Appl Genet, 109(7): 1329-36. [Abstract] [Full-text]
49. Direct detection of Staphylococcus aureus mRNA using a flow through microarray.
    J Microbiol Methods, 60(1): 47-54. [Abstract] [Full-text]
50. cDNA microarray analysis to compare HCV subgenomic replicon cells with their cured cells.
    Virus Res, 107(1): 73-81. [Abstract] [Full-text]
51. Chromophobe renal cell carcinoma: a comparative study of histological, immunohistochemical and ultrastructural features using high throughput tissue microarray.
    Histopathology, 45(6): 593-602. [Abstract] [Full-text]
52. Differential gene expression in neural stem cells and oligodendrocyte precursor cells: a cDNA microarray analysis.
    J Neurosci Res, 78(5): 637-46. [Abstract] [Full-text]

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