Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 1 (2004), Issue 7 (December)

1. Identification of DNA copy number changes in microdissected serous ovarian cancer tissue using a cDNA microarray platform.
   Cancer Genet Cytogenet, 155(2): 97-107. [Abstract] [Full-text]
2. DNA microarray allows molecular profiling of rheumatoid arthritis and identification of pathophysiological targets.
   Genes Immun, 5(8): 597-608. [Abstract] [Full-text]
3. Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria.
   Appl Environ Microbiol, 70(12): 7161-72. [Abstract] [Full-text]
4. Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages.
   Appl Environ Microbiol, 70(12): 6998-7009. [Abstract] [Full-text]
5. Neuron-based microarray sensors for environmental sensing.
   Electrophoresis, 25(21): 3746-60. [Abstract] [Full-text]
6. Biological significance of p27 and Skp2 expression in renal cell carcinoma. A systematic analysis of primary and metastatic tumour tissues using a tissue microarray technique.
   Virchows Arch, 445(6): 631-6. [Abstract] [Full-text]
7. Defining minimum genomic regions of imbalance involved in testicular germ cell tumors of adolescents and adults through genome wide microarray analysis of cDNA clones.
   Oncogene, 23(56): 9142-7. [Abstract] [Full-text]
8. 4p terminal deletion and 11p subtelomeric duplication detected by genomic microarray in a patient with Wolf-Hirschhorn syndrome and an atypical phenotype.
   J Pediatr, 145(6): 840-2. [Abstract] [Full-text]
9. Microarray analysis of metastasis-associated gene expression profiling in a murine model of thyroid carcinoma pulmonary metastasis: identification of S100A4 (Mts1) gene overexpression as a poor prognostic marker for thyroid carcinoma.
   J Clin Endocrinol Metab, 89(12): 6146-54. [Abstract] [Full-text]
10. Microarray profiling for differential gene expression in ovaries and ovarian follicles of pigs selected for increased ovulation rate.
    Genetics, 168(3): 1529-37. [Abstract] [Full-text]
11. Microarray analysis of activated mixed glial (microglia) and monocyte-derived macrophage gene expression.
    J Neuroimmunol, 157(1): 27-38. [Abstract] [Full-text]
12. Microarray analysis of changes in cellular gene expression induced by productive infection of primary human astrocytes: implications for HAD.
    J Neuroimmunol, 157(1): 17-26. [Abstract] [Full-text]
13. Identification and analysis of safener-inducible expressed sequence tags in Populus using a cDNA microarray.
    Planta, 220(2): 296-306. [Abstract] [Full-text]
14. Mapping of genomic segments of influenza B virus strains by an oligonucleotide microarray method.
    J Clin Microbiol, 42(12): 5793-801. [Abstract] [Full-text]
15. Microarray analysis of Cryphonectria parasitica Galpha- and Gbetagamma-signalling pathways reveals extensive modulation by hypovirus infection.
    Microbiology, 150: 4033-43. [Abstract] [Full-text]
16. Differentiation of Cucumber mosaic virus isolates by hybridization to oligonucleotides in a microarray format.
    J Virol Methods, 123(1): 101-8. [Abstract] [Full-text]
17. Microarray analysis of gene expression in chondrosarcoma cells treated with bee venom.
    Toxicon, 45(1): 81-91. [Abstract] [Full-text]
18. Microarray analysis of proliferative and hypertrophic growth plate zones identifies differentiation markers and signal pathways.
    Bone, 35(6): 1273-93. [Abstract] [Full-text]
19. Characterization of oncogene dysregulation in multiple myeloma by combined FISH and DNA microarray analyses.
    Genes Chromosomes Cancer, 42(2): 117-27. [Abstract] [Full-text]
20. Gene amplifications in osteosarcoma-CGH microarray analysis.
    Genes Chromosomes Cancer, 42(2): 158-63. [Abstract] [Full-text]
21. limmaGUI: a graphical user interface for linear modeling of microarray data.
    Bioinformatics, 20(18): 3705-6. [Abstract] [Full-text]
22. Accurate detection of aneuploidies in array CGH and gene expression microarray data.
    Bioinformatics, 20(18): 3533-43. [Abstract] [Full-text]
23. The 'subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses.
    Bioinformatics, 20(18): 3544-52. [Abstract] [Full-text]
24. The Baumgartner-Weiss-Schindler test for the detection of differentially expressed genes in replicated microarray experiments.
    Bioinformatics, 20(18): 3553-64. [Abstract] [Full-text]
25. GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.
    Bioinformatics, 20(18): 3691-3. [Abstract] [Full-text]
26. Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data.
    Bioinformatics, 20(18): 3687-90. [Abstract] [Full-text]
27. Importing MAGE-ML format microarray data into BioConductor.
    Bioinformatics, 20(18): 3641-2. [Abstract] [Full-text]
28. Effects of pooling mRNA in microarray class comparisons.
    Bioinformatics, 20(18): 3318-25. [Abstract] [Full-text]
29. DNMAD: web-based diagnosis and normalization for microarray data.
    Bioinformatics, 20(18): 3656-8. [Abstract] [Full-text]
30. Development of an individual-specific autoantibody (ISA) protein microarray.
    Biotechnol Appl Biochem, 41: 85-8. [Abstract] [Full-text]
31. Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray.
    J Virol, 79(1): 341-52. [Abstract] [Full-text]
32. Association of 20q13.2 copy number changes with the advanced stage of ovarian cancer-tissue microarray analysis.
    Eur J Obstet Gynecol Reprod Biol, 118(1): 81-5. [Abstract] [Full-text]
33. Microarray analysis on CYPs expression in pregnant rats after treatment with pregnenolone-16alpha-carbonitrile and phenobarbital.
    Exp Mol Pathol, 78(1): 71-7. [Abstract] [Full-text]
34. Label-free reading of microarray-based immunoassays with surface plasmon resonance imaging.
    Anal Chem, 76(24): 7257-62. [Abstract] [Full-text]
35. Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data.
    Nucleic Acids Res, 32(22): e180. [Abstract] [Full-text]
36. Clinical applications of microarray technology: creatine kinase B is an up-regulated gene in epithelial ovarian cancer and shows promise as a serum marker.
    Gynecol Oncol, 96(1): 77-83. [Abstract] [Full-text]
37. A novel 5q11.2 deletion detected by microarray comparative genomic hybridisation in a child referred as a case of suspected 22q11 deletion syndrome.
    Hum Genet, 116(1): 83-90. [Abstract] [Full-text]
38. cDNA microarray analysis of developing grape (Vitis vinifera cv. Shiraz) berry skin.
    Funct Integr Genomics, 5(1): 40-58. [Abstract] [Full-text]
39. Covariate adjustment in the analysis of microarray data from clinical studies.
    Funct Integr Genomics, 5(1): 18-27. [Abstract] [Full-text]
40. cDNA microarray analysis of bovine embryo gene expression profiles during the pre-implantation period.
    Reprod Biol Endocrinol, 2(1): 77. [Abstract] [Full-text]
41. Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection.
    Physiol Genomics, 20(1): 21-35. [Abstract] [Full-text]
42. Microarray-based detection of multidrug resistance in human tumor cells by expression profiling of ATP-binding cassette transporter genes.
    Cancer Res, 64(24): 8987-93. [Abstract] [Full-text]
43. Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.
    Nucleic Acids Res, 32(22): 6627-35. [Abstract] [Full-text]
44. The Stanford Microarray Database accommodates additional microarray platforms and data formats.
    Nucleic Acids Res, 33: D580-2. [Abstract] [Full-text]
45. ArrayExpress--a public repository for microarray gene expression data at the EBI.
    Nucleic Acids Res, 33: D553-5. [Abstract] [Full-text]
46. Microarray analysis of gene/transcript expression in Angelman syndrome: deletion versus UPD.
    Genomics, 85(1): 85-91. [Abstract] [Full-text]
47. Electronic microarray analysis of 16S rDNA amplicons for bacterial detection.
    J Biotechnol, 115(1): 11-21. [Abstract] [Full-text]
48. Feature genes of hepatitis B virus-positive hepatocellular carcinoma, established by its molecular discrimination approach using prediction analysis of microarray.
    Biochim Biophys Acta, 1739(1): 50-61. [Abstract] [Full-text]
49. Upregulation of the NNP-1 (novel nuclear protein-1, D21S2056E) gene in keloid tissue determined by cDNA microarray and in situ hybridization.
    Br J Dermatol, 151(6): 1143-9. [Abstract] [Full-text]
50. Noise filtering and nonparametric analysis of microarray data underscores discriminating markers of oral, prostate, lung, ovarian and breast cancer.
    BMC Bioinformatics, 5(1): 185. [Abstract] [Full-text]
51. Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.
    Mol Cell, 16(6): 929-41. [Abstract] [Full-text]
52. Optimizing microarray in experimental hypertension.
    Kidney Int, 67(1): 364-70. [Abstract] [Full-text]
53. Comprehensive gene expression profiling of anaplastic thyroid cancers with cDNA microarray of 25 344 genes.
    Endocr Relat Cancer, 11(4): 843-54. [Abstract] [Full-text]
54. L1CAM, INP10, P-cadherin, tPA and ITGB4 over-expression in malignant pleural mesotheliomas revealed by combined use of cDNA and tissue microarray.
    Carcinogenesis, 26(1): 17-25. [Abstract] [Full-text]
55. Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information.
    BMC Bioinformatics, 5(1): 191. [Abstract] [Full-text]
56. Sample size calculation for multiple testing in microarray data analysis.
    Biostatistics, 6(1): 157-69. [Abstract] [Full-text]
57. Sample size determination in microarray experiments for class comparison and prognostic classification.
    Biostatistics, 6(1): 27-38. [Abstract] [Full-text]
58. Optimized LOWESS normalization parameter selection for DNA microarray data.
    BMC Bioinformatics, 5(1): 194. [Abstract] [Full-text]
59. Calibration and assessment of channel-specific biases in microarray data with extended dynamical range.
    BMC Bioinformatics, 5(1): 177. [Abstract] [Full-text]
60. Engineering HlyA hypersecretion in Escherichia coli based on proteomic and microarray analyses.
    Biotechnol Bioeng, 89(2): 195-205. [Abstract] [Full-text]
61. Altered expression of mitochondria-related genes in postmortem brains of patients with bipolar disorder or schizophrenia, as revealed by large-scale DNA microarray analysis.
    Hum Mol Genet, 14(2): 241-53. [Abstract] [Full-text]

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