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Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B

Department of Electronical Engineering, ESAT-SCD, K.U. Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium.

The microarray gene expression markup language (MAGE-ML) is a widely used XML (eXtensible Markup Language) standard for describing and exchanging information about microarray experiments. It can describe microarray designs, microarray experiment designs, gene expression data and data analysis results. We describe RMAGEML, a new Bioconductor package that provides a link between cDNA microarray data stored in MAGE-ML format and the Bioconductor framework for preprocessing, visualization and analysis of microarray experiments. AVAILABILITY: http://www.bioconductor.org. Open Source.

Published 13 December 2004 in Bioinformatics, 20(18): 3641-2.
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Microarrays Research Today Archive:

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Microarrays Books

Bioinformatics in Cancer and Cancer Therapy (Cancer Drug Discovery and Development)

Bioinformatics in Cancer and Cancer Therapy (Cancer Drug Discovery and Development)