Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 10 (October)

1. Chromosomal and genetic abnormalities in benign and malignant meningiomas using DNA microarray.
   Neurol Res, 27(7): 747-54. [Abstract] [Full-text]
2. Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray.
   BMC Genomics, 6: 126. [Abstract] [Full-text]
3. Microarray analysis detects differentially expressed genes in the pharyngeal region of mice lacking Tbx1.
   Dev Biol, 285(2): 554-69. [Abstract] [Full-text]
4. Dual activation of pathways regulated by steroid receptors and peptide growth factors in primary prostate cancer revealed by Factor Analysis of microarray data.
   BMC Genomics, 6: 109. [Abstract] [Full-text]
5. Selection of control genes for quantitative RT-PCR based on microarray data.
   Biochem Biophys Res Commun, 337(1): 306-12. [Abstract] [Full-text]
6. Patient-based cross-platform comparison of oligonucleotide microarray expression profiles.
   Lab Invest, 85(8): 1024-39. [Abstract] [Full-text]
7. Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus.
   Appl Environ Microbiol, 71(10): 5794-804. [Abstract] [Full-text]
8. Genome-wide estimation of transcript concentrations from spotted cDNA microarray data.
   Nucleic Acids Res, 33(17): e143. [Abstract] [Full-text]
9. Fusing microarray experiments with multivariate regression.
   Bioinformatics, 21: ii137-ii143. [Abstract] [Full-text]
10. Analyzing microarray data using quantitative association rules.
    Bioinformatics, 21: ii123-ii129. [Abstract] [Full-text]
11. Data-adaptive test statistics for microarray data.
    Bioinformatics, 21: ii108-ii114. [Abstract] [Full-text]
12. Genomewide single nucleotide polymorphism microarray mapping in basal cell carcinomas unveils uniparental disomy as a key somatic event.
    Cancer Res, 65(19): 8597-603. [Abstract] [Full-text]
13. Identification of overexpression and amplification of ABCF2 in clear cell ovarian adenocarcinomas by cDNA microarray analyses.
    Clin Cancer Res, 11(19): 6880-8. [Abstract] [Full-text]
14. DNA nanofilm thickness measurement on microarray in air and in liquid using an atomic force microscope.
    Biosens Bioelectron, 21(4): 627-36. [Abstract] [Full-text]
15. Analysis of gene and protein expression in healthy and carious tooth pulp with cDNA microarray and two-dimensional gel electrophoresis.
    Eur J Oral Sci, 113(5): 369-79. [Abstract] [Full-text]
16. Impact of microarray technology in nutrition and food research.
    Mol Nutr Food Res, 49(10): 908-17. [Abstract] [Full-text]
17. RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates.
    Plant Cell, 17(10): 2791-804. [Abstract] [Full-text]
18. A semi-quantitative microarray method to detect fetal RNAs in maternal plasma.
    Prenat Diagn, 25(10): 912-8. [Abstract] [Full-text]
19. Use of a three-dimensional microarray system for detection of levofloxacin resistance and the mec A gene in Staphylococcus aureus.
    J Clin Microbiol, 43(10): 5187-94. [Abstract] [Full-text]
20. Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses.
    J Clin Microbiol, 43(10): 4943-53. [Abstract] [Full-text]
21. Combining microarray and genomic data to predict DNA binding motifs.
    Microbiology, 151: 3197-213. [Abstract] [Full-text]
22. HER2 Amplification and Overexpression Is Not Present in Pediatric Osteosarcoma: A Tissue Microarray Study.
    Pediatr Dev Pathol. [Abstract] [Full-text]
23. IgE and IgG4 epitope mapping by microarray immunoassay reveals the diversity of immune response to the peanut allergen, Ara h 2.
    J Allergy Clin Immunol, 116(4): 893-9. [Abstract] [Full-text]
24. DNA microarray analysis of gene expression in eutopic endometrium from patients with deep endometriosis using laser capture microdissection.
    Fertil Steril, 84: 1180-90. [Abstract] [Full-text]
25. Phenotypical enrichment strategies for microarray data analysis applied in a type II diabetes study.
    OMICS, 9(3): 251-65. [Abstract] [Full-text]
26. Molecular classification of papillary thyroid carcinoma: distinct BRAF, RAS, and RET/PTC mutation-specific gene expression profiles discovered by DNA microarray analysis.
    Oncogene, 24(44): 6646-56. [Abstract] [Full-text]
27. Cardioplegia prevents ischemia-induced transcriptional alterations of cytoprotective genes in rat hearts: a DNA microarray study.
    J Thorac Cardiovasc Surg, 130(4): 1151. [Abstract] [Full-text]
28. Single nucleotide polymorphisms detection based on DNA microarray technology: HLA as a model.
    Autoimmun Rev, 4(8): 510-4. [Abstract] [Full-text]
29. Using microarray gene signatures to elucidate mechanisms of antibiotic action and resistance.
    Drug Discov Today, 10(18): 1245-52. [Abstract] [Full-text]
30. Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide.
    BMC Genomics, 6: 115. [Abstract] [Full-text]
31. Development of a cluster of differentiation antibody-based protein microarray.
    J Immunol Methods, 305(1): 3-9. [Abstract] [Full-text]
32. Microarray Analysis Reveals Similarities and Variations in Genetic Programs Controlling Pollination/Fertilization and Stress Responses in Rice (Oryza sativa L.).
    Plant Mol Biol, 59(1): 151-64. [Abstract] [Full-text]
33. A Pilot Study of Transcription Unit Analysis in Rice Using Oligonucleotide Tiling-path Microarray.
    Plant Mol Biol, 59(1): 137-49. [Abstract] [Full-text]
34. Analysis of recursive gene selection approaches from microarray data.
    Bioinformatics, 21(19): 3741-7. [Abstract] [Full-text]
35. Accounting for probe-level noise in principal component analysis of microarray data.
    Bioinformatics, 21(19): 3748-54. [Abstract] [Full-text]
36. Analysis of calcium-inducible genes in keratinocytes using suppression subtractive hybridization and cDNA microarray.
    Genomics, 86(5): 528-38. [Abstract] [Full-text]
37. EST sequencing and time course microarray hybridizations identify more than 700 Medicago truncatula genes with developmental expression regulation in flowers and pods.
    Planta, 222(2): 269-83. [Abstract] [Full-text]
38. A protocol for building and evaluating predictors of disease state based on microarray data.
    Bioinformatics, 21(19): 3755-62. [Abstract] [Full-text]
39. Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig.
    Genomics, 86(5): 618-25. [Abstract] [Full-text]
40. Applying instructional design theories to bioinformatics education in microarray analysis and primer design workshops.
    Cell Biol Educ, 4(3): 199-206. [Abstract] [Full-text]
41. Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.
    Plant Physiol, 139(2): 632-6. [Abstract] [Full-text]
42. Entwicklung der Protein-Microarray-Technik und Nutzung im Rahmen einer individualisierten molekularen Tumortherapie.
    Onkologie, 28: 40-2. [Abstract] [Full-text]
43. Identifying genes from up-down properties of microarray expression series.
    Bioinformatics, 21(20): 3859-64. [Abstract] [Full-text]
44. Construction and validation of a Bovine Innate Immune Microarray.
    BMC Genomics, 6: 135. [Abstract] [Full-text]
45. GeneRank: using search engine technology for the analysis of microarray experiments.
    BMC Bioinformatics, 6: 233. [Abstract] [Full-text]
46. EXPANDER--an integrative program suite for microarray data analysis.
    BMC Bioinformatics, 6: 232. [Abstract] [Full-text]
47. Robust prostate cancer marker genes emerge from direct integration of inter-study microarray data.
    Bioinformatics, 21(20): 3905-11. [Abstract] [Full-text]
48. Bias in the estimation of false discovery rate in microarray studies.
    Bioinformatics, 21(20): 3865-72. [Abstract] [Full-text]
49. List of lists-annotated (LOLA): a database for annotation and comparison of published microarray gene lists.
    Gene, 360(1): 78-82. [Abstract] [Full-text]
50. Association between microarray gene expression signature and extravascular matrix patterns in primary uveal melanomas.
    Am J Ophthalmol, 140(4): 748-9. [Abstract] [Full-text]
51. Distinct molecular signature of inflammatory breast cancer by cDNA microarray analysis.
    Breast Cancer Res Treat, 93(3): 237-46. [Abstract] [Full-text]
52. Suppression of death receptor-mediated apoptosis by 1,25-dihydroxyvitamin D3 revealed by microarray analysis.
    J Biol Chem, 280(42): 35458-68. [Abstract] [Full-text]
53. Surface plasmon resonance phase-shift interferometry: real-time DNA microarray hybridization analysis.
    J Biomed Opt, 10(3): 034005. [Abstract] [Full-text]
54. Tissue microarray analysis of the prognostic value of E-cadherin, Ki67, p53, p27, survivin and MSH2 expression in upper urinary tract transitional cell carcinoma.
    Eur Urol, 48(5): 764-70. [Abstract] [Full-text]
55. Microarray analysis reveals novel gene expression changes associated with erectile dysfunction in diabetic rats.
    Physiol Genomics, 23(2): 192-205. [Abstract] [Full-text]
56. Gene expression profiling of gilthead sea bream during early development and detection of stress-related genes by the application of cDNA microarray technology.
    Physiol Genomics, 23(2): 182-91. [Abstract] [Full-text]
57. Microarray Profiling of Plastid Gene Expression in a Unicellular Red Alga, Cyanidioschyzon merolae.
    Plant Mol Biol, 59(3): 375-85. [Abstract] [Full-text]
58. On-chip magnetic bead microarray using hydrodynamic focusing in a passive magnetic separator.
    Lab Chip, 5(11): 1315-9. [Abstract] [Full-text]
59. Development of an automation system for single nucleotide polymorphisms genotyping using bio-strand, a new three-dimensional microarray.
    J Biosci Bioeng, 99(2): 120-4. [Abstract] [Full-text]
60. Marked differences in human melanoma antigen-specific T cell responsiveness after vaccination using a functional microarray.
    PLoS Med, 2(10): e265. [Abstract] [Full-text]
61. Microarray profiling of colorectal cancer in Bangladeshi patients.
    Colorectal Dis, 7(6): 571-5. [Abstract] [Full-text]
62. Tumor-infiltrating cells as a prognostic factor in Hodgkin's lymphoma: a quantitative tissue microarray study in a large retrospective cohort of 267 patients.
    Leuk Lymphoma, 46(11): 1581-91. [Abstract] [Full-text]
63. Cell microarray for screening feeder cells for differentiation of embryonic stem cells.
    J Biosci Bioeng, 100(3): 292-6. [Abstract] [Full-text]
64. A friendly statistics package for microarray analysis.
    Bioinformatics, 21(21): 4069-70. [Abstract] [Full-text]
65. Microarray methods in Drosophila neurobiology.
    Invert Neurosci, 5(3): 189-95. [Abstract] [Full-text]
66. A two-stage normalization method for partially degraded mRNA microarray data.
    Bioinformatics, 21(21): 4000-6. [Abstract] [Full-text]
67. Network constrained clustering for gene microarray data.
    Bioinformatics, 21(21): 4014-20. [Abstract] [Full-text]
68. Miniaturized glucose biosensor modified with a nitric oxide-releasing xerogel microarray.
    Biosens Bioelectron, 21(5): 749-57. [Abstract] [Full-text]
69. Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes.
    Mol Endocrinol, 19(11): 2685-95. [Abstract] [Full-text]
70. High-throughput tissue microarray analysis of CMYC amplificationin urinary bladder cancer.
    Int J Cancer, 117(6): 952-6. [Abstract] [Full-text]
71. Microarray analysis of cytokine and chemokine gene expression after prednisolone treatment in murine experimental autoimmune uveoretinitis.
    Invest Ophthalmol Vis Sci, 46(11): 4224-34. [Abstract] [Full-text]
72. Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy.
    Mol Biol Cell, 16(11): 5316-33. [Abstract] [Full-text]
73. Diffusion, Mixing, and Associated Dye Effects in DNA-Microarray Hybridizations.
    Biophys J, 89(5): 3277-84. [Abstract] [Full-text]
74. Comments on selected fundamental aspects of microarray analysis.
    Comput Biol Chem, 29(5): 319-36. [Abstract] [Full-text]
75. A quality-controlled microarray method for gene expression profiling.
    Anal Biochem, 346(2): 217-24. [Abstract] [Full-text]
76. GeneMCL in microarray analysis.
    Comput Biol Chem, 29(5): 354-9. [Abstract] [Full-text]
77. DNA microarray analysis of white adipose tissue from obese (fa/fa) Zucker rats treated with a beta3-adrenoceptor agonist, KTO-7924.
    Pharmacol Res, 52(5): 395-400. [Abstract] [Full-text]
78. Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations.
    Nucleic Acids Res, 33(19): e166. [Abstract] [Full-text]
79. Evolution of prenatal genetics: from point mutation testing to chromosomal microarray analysis.
    Expert Rev Mol Diagn, 5(6): 883-92. [Abstract] [Full-text]
80. Microarray immunoassay for phenoxybenzoic Acid using polymer encapsulated Eu:Gd2O3 nanoparticles as fluorescent labels.
    Anal Chem, 77(21): 6864-73. [Abstract] [Full-text]

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