Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 11 (November)

1. Correlation of bFGF expression in renal cell cancer with clinical and histopathological features by tissue microarray analysis and measurement of serum levels.
   J Cancer Res Clin Oncol, 131(11): 715-22. [Abstract] [Full-text]
2. Microarray-based CGH of sporadic and syndrome-related pheochromocytomas using a 0.1-0.2 Mb bacterial artificial chromosome array spanning chromosome arm 1p.
   Genes Chromosomes Cancer, 45(1): 83-93. [Abstract] [Full-text]
3. Tissue microarray of head and neck squamous carcinoma: validation of the methodology for the study of cutaneous fatty acid-binding protein, vascular endothelial growth factor, involucrin and Ki-67.
   Virchows Arch, 447(4): 701-9. [Abstract] [Full-text]
4. Advances in functional protein microarray technology.
   FEBS J, 272(21): 5400-11. [Abstract] [Full-text]
5. DNA microarray technique for detection and identification of seven flaviviruses pathogenic for man.
   J Med Virol, 77(4): 528-40. [Abstract] [Full-text]
6. MASQOT: a method for cDNA microarray spot quality control.
   BMC Bioinformatics, 6: 250. [Abstract] [Full-text]
7. Cell of origin, germinal center versus nongerminal center, determined by immunohistochemistry on tissue microarray, does not correlate with outcome in patients with relapsed and refractory DLBCL.
   Blood, 106(10): 3383-5. [Abstract] [Full-text]
8. Doelan: a solution for quality control monitoring of microarray production.
   Bioinformatics, 21(22): 4194-5. [Abstract] [Full-text]
9. MILVA: an interactive tool for the exploration of multidimensional microarray data.
   Bioinformatics, 21(22): 4192-3. [Abstract] [Full-text]
10. DNA microarray data imputation and significance analysis of differential expression.
    Bioinformatics, 21(22): 4155-61. [Abstract] [Full-text]
11. Design, validation, and application of a seven-strain Staphylococcus aureus PCR product microarray for comparative genomics.
    Appl Environ Microbiol, 71(11): 7504-14. [Abstract] [Full-text]
12. A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments.
    Appl Environ Microbiol, 71(11): 7064-74. [Abstract] [Full-text]
13. Microarray analysis on Phase II drug metabolizing enzymes expression in pregnant rats after treatment with pregnenolone-16alpha-carbonitrile or phenobarbital.
    Exp Mol Pathol, 79(3): 272-7. [Abstract] [Full-text]
14. Protocols for the assurance of microarray data quality and process control.
    Nucleic Acids Res, 33(19): e172. [Abstract] [Full-text]
15. Exo-Taq-Based Detection of DNA-Binding Protein for Homogeneous and Microarray Format.
    J Biochem (Tokyo), 138(4): 473-8. [Abstract] [Full-text]
16. Using protein microarray as a diagnostic assay for non-small cell lung cancer.
    Am J Respir Crit Care Med, 172(10): 1308-14. [Abstract] [Full-text]
17. Genomic microarray analysis identifies candidate loci in patients with corpus callosum anomalies.
    Neurology, 65(9): 1496-8. [Abstract] [Full-text]
18. Development of an Internally Controlled Antibody Microarray.
    Mol Cell Proteomics, 4(11): 1664-1672. [Abstract] [Full-text]
19. Microarray comparative genomic hybridisation analysis of intraocular uveal melanomas identifies distinctive imbalances associated with loss of chromosome 3.
    Br J Cancer, 93(10): 1191-6. [Abstract] [Full-text]
20. Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling.
    Nat Methods, 2(11): 851-6. [Abstract] [Full-text]
21. Microarray-based pncA genotyping of pyrazinamide-resistant strains of Mycobacterium tuberculosis.
    J Med Microbiol, 54: 1127-31. [Abstract] [Full-text]
22. Use of a rainbow trout oligonucleotide microarray to determine transcriptional patterns in aflatoxin B1-induced hepatocellular carcinoma compared to adjacent liver.
    Toxicol Sci, 88(2): 319-30. [Abstract] [Full-text]
23. SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data.
    BMC Genomics, 6: 149. [Abstract] [Full-text]
24. Use of a microarray to assess the distribution of plasmid and chromosomal virulence genes in strains of enteroaggregative Escherichia coli.
    FEMS Microbiol Lett, 253(1): 119-24. [Abstract] [Full-text]
25. Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays.
    Mol Biochem Parasitol, 144(2): 177-86. [Abstract] [Full-text]
26. Microarray and allele specific PCR detection of point mutations in Mycobacterium tuberculosis genes associated with drug resistance.
    J Microbiol Methods, 63(3): 318-30. [Abstract] [Full-text]
27. Microarray analysis of endothelial differentially expressed genes in liver of cirrhotic rats.
    Gastroenterology, 129(5): 1686-95. [Abstract] [Full-text]
28. Identification of potential caloric restriction mimetics by microarray profiling.
    Physiol Genomics, 23(3): 343-50. [Abstract] [Full-text]
29. cDNA microarray analysis reveals novel candidate genes expressed in human peripheral blood following exhaustive exercise.
    Physiol Genomics, 23(3): 287-94. [Abstract] [Full-text]
30. Microarray analysis of LIF/Stat3 transcriptional targets in embryonic stem cells.
    Stem Cells, 23(10): 1634-42. [Abstract] [Full-text]
31. Gene expression microarray studies in polygenic psychiatric disorders: Applications and data analysis.
    Brain Res Brain Res Rev, 50(1): 142-55. [Abstract] [Full-text]
32. Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations.
    Cancer Res, 65(22): 10208-13. [Abstract] [Full-text]
33. Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination.
    Nucleic Acids Res, 33(20): 6469-85. [Abstract] [Full-text]
34. Identification by microarray analysis of aspartate aminotransferase and glutamine synthetase as glucocorticoid target genes in a mouse Schwann cell line.
    J Steroid Biochem Mol Biol, 97(4): 342-52. [Abstract] [Full-text]
35. The development of a high-density canine microarray.
    J Hered, 96(7): 817-20. [Abstract] [Full-text]
36. Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.
    Infect Immun, 73(12): 7894-905. [Abstract] [Full-text]
37. Secretome analysis of microarray data reveals extracellular events associated with proliferative potential in a cell line model of breast disease.
    Cancer Lett. [Abstract] [Full-text]
38. p53 and c-kit (CD117) protein expression as prognostic indicators in breast phyllodes tumors: a tissue microarray study.
    Mod Pathol, 18(12): 1527-34. [Abstract] [Full-text]
39. Effects of 3-methylcholanthrene on gene expression profiling in the rat using cDNA microarray analyses.
    Chem Res Toxicol, 18(11): 1634-41. [Abstract] [Full-text]
40. Grating-coupled surface plasmon resonance: a cell and protein microarray platform.
    Proteomics, 5(17): 4432-42. [Abstract] [Full-text]
41. The influence of missing value imputation on detection of differentially expressed genes from microarray data.
    Bioinformatics, 21(23): 4272-9. [Abstract] [Full-text]
42. A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data.
    Bioinformatics, 21(23): 4280-8. [Abstract] [Full-text]
43. Molecular mechanisms of action of angiopreventive anti-oxidants on endothelial cells: Microarray gene expression analyses.
    Mutat Res, 591(1): 198-211. [Abstract] [Full-text]
44. Differential expression of insulin-like growth factor binding protein 1 and ferritin light polypeptide in gestational trophoblastic neoplasia: combined cDNA suppression subtractive hybridization and microarray study.
    Cancer, 104(11): 2409-16. [Abstract] [Full-text]
45. How does human stem cell therapy influence gene expression after liver injury? Microarray evaluation on a rat model.
    Dig Liver Dis, 37(12): 952-63. [Abstract] [Full-text]
46. True and false discovery in DNA microarray experiments: transcriptome changes in the hippocampus of presenilin 1 mutant mice.
    Methods, 37(3): 261-73. [Abstract] [Full-text]
47. A microarray data analysis framework for postmortem tissues.
    Methods, 37(3): 247-60. [Abstract] [Full-text]
48. Gene discovery in neuropharmacological and behavioral studies using Affymetrix microarray data.
    Methods, 37(3): 219-28. [Abstract] [Full-text]
49. Microarray-based functional protein profiling using peptide nucleic acid-encoded libraries.
    Expert Rev Proteomics, 2(6): 937-47. [Abstract] [Full-text]
50. Biomarker discovery using protein microarray technology platforms: antibody-antigen complex profiling.
    Expert Rev Proteomics, 2(6): 879-89. [Abstract] [Full-text]
51. cDNA microarray analysis identifies genes induced in common by peptide growth factors and androgen in human prostate epithelial cells.
    Mol Carcinog, 44(4): 242-51. [Abstract] [Full-text]
52. Microarray analysis of differential gene expression in temporomandibular joint condylar cartilage after experimentally induced osteoarthritis.
    Osteoarthritis Cartilage, 13(12): 1115-25. [Abstract] [Full-text]
53. Optimization of fragmentation conditions for microarray analysis of viral RNA.
    Anal Biochem, 347(2): 316-23. [Abstract] [Full-text]
54. A polypyrrole protein microarray for antibody-antigen interaction studies using a label-free detection process.
    Anal Biochem, 347(2): 193-200. [Abstract] [Full-text]
55. cDNA microarray-based translational research in soft tissue sarcoma.
    J Surg Oncol, 92(4): 267-71. [Abstract] [Full-text]
56. Prevention of hyperglycemia in Zucker diabetic fatty rats by exercise training: effects on gene expression in insulin-sensitive tissues determined by high-density oligonucleotide microarray analysis.
    Metabolism, 54(12): 1571-81. [Abstract] [Full-text]
57. MAASE: an alternative splicing database designed for supporting splicing microarray applications.
    RNA, 11(12): 1767-76. [Abstract] [Full-text]
58. An Xq22.3 duplication detected by comparative genomic hybridization microarray (Array-CGH) defines a new locus (FGS5) for FG syndrome.
    Am J Med Genet A, 139(3): 221-6. [Abstract] [Full-text]
59. A microarray-based comparative analysis of gene expression profiles during grain development in transgenic and wild type wheat.
    Transgenic Res, 14(6): 887-905. [Abstract] [Full-text]
60. Microarray-based survey of a subset of putative olfactory genes in the mosquito Anopheles gambiae.
    Insect Mol Biol, 14(6): 575-89. [Abstract] [Full-text]
61. Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments.
    Funct Integr Genomics, 6(1): 1-13. [Abstract] [Full-text]
62. Transcriptional analysis of the molecular basis of human kidney aging using cDNA microarray profiling.
    Kidney Int, 68(6): 2667-79. [Abstract] [Full-text]
63. Microarray and bioinformatic detection of novel and established genes expressed in experimental anti-Thy1 nephritis.
    Kidney Int, 68(6): 2542-61. [Abstract] [Full-text]

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