Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 12 (December)

1. Microarray-based global differential expression profiling of P450 monooxygenases and regulatory proteins for signal transduction pathways in the white rot fungus Phanerochaete chrysosporium.
   Mol Genet Genomics, 274(5): 454-66. [Abstract] [Full-text]
2. Cycloheximide treatment of cotton ovules alters the abundance of specific classes of mRNAs and generates novel ESTs for microarray expression profiling.
   Mol Genet Genomics, 274(5): 477-93. [Abstract] [Full-text]
3. maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.
   BMC Bioinformatics, 6: 264. [Abstract] [Full-text]
4. Antibody microarray profiling reveals individual and combined serum proteins associated with pancreatic cancer.
   Cancer Res, 65(23): 11193-202. [Abstract] [Full-text]
5. Glial inflammation and neurodegeneration induced by candoxin, a novel neurotoxin from Bungarus candidus venom: global gene expression analysis using microarray.
   Toxicon, 46(8): 883-99. [Abstract] [Full-text]
6. Microarray analysis of the differential transformation mediated by Kirsten and Harvey Ras oncogenes in a human colorectal adenocarcinoma cell line.
   Int J Cancer, 118(3): 616-27. [Abstract] [Full-text]
7. Microarray analysis of differentially expressed genes in vaginal tissues from women with stress urinary incontinence compared with asymptomatic women.
   Hum Reprod, 21(1): 22-9. [Abstract] [Full-text]
8. MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.
   BMC Bioinformatics, 6: 268. [Abstract] [Full-text]
9. Microarray expression profiling resources for plant genomics.
   Trends Plant Sci, 10(12): 603-9. [Abstract] [Full-text]
10. Model-guided microarray implicates the retromer complex in Alzheimer's disease.
    Ann Neurol, 58(6): 909-19. [Abstract] [Full-text]
11. Rapid detection of deletional alpha-thalassemia by an oligonucleotide microarray.
    Am J Hematol, 80(4): 306-8. [Abstract] [Full-text]
12. DNA microarray study on gene expression profiles in co-cultured endothelial and smooth muscle cells in response to 4- and 24-h shear stress.
    Mol Cell Biochem, 281(1): 1-15. [Abstract] [Full-text]
13. Energy restriction prevents the development of type 2 diabetes in Zucker diabetic fatty rats: coordinated patterns of gene expression for energy metabolism in insulin-sensitive tissues and pancreatic islets determined by oligonucleotide microarray analysis.
    Metabolism, 55(1): 43-52. [Abstract] [Full-text]
14. Differential coexpression analysis using microarray data and its application to human cancer.
    Bioinformatics, 21(24): 4348-55. [Abstract] [Full-text]
15. Regularized ROC method for disease classification and biomarker selection with microarray data.
    Bioinformatics, 21(24): 4356-62. [Abstract] [Full-text]
16. Microarray phenotyping in Dictyostelium reveals a regulon of chemotaxis genes.
    Bioinformatics, 21(24): 4371-7. [Abstract] [Full-text]
17. Evaluation of gel-pad oligonucleotide microarray technology by using artificial neural networks.
    Appl Environ Microbiol, 71(12): 8663-76. [Abstract] [Full-text]
18. Microarray-based detection and typing of the rhizobium nodulation gene nodC: potential of DNA arrays to diagnose biological functions of interest.
    Appl Environ Microbiol, 71(12): 8042-8. [Abstract] [Full-text]
19. Identification of the Difference in Extracellular Matrix and Adhesion Molecules of Cultured Human Gingival Fibroblasts Versus Juvenile Hyaline Fibromatosis Gingival Fibroblasts Using cDNA Microarray Analysis.
    J Periodontol, 76(12): 2244-2253. [Abstract] [Full-text]
20. Clues to asthma pathogenesis from microarray expression studies.
    Pharmacol Ther, 109(1): 284-94. [Abstract] [Full-text]
21. Microarray and real-time RT-PCR analyses of a novel set of differentially expressed human genes in ECV304 endothelial-like cells infected with dengue virus type 2.
    J Virol Methods, 131(1): 47-57. [Abstract] [Full-text]
22. Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors.
    Genome Res, 15(12): 1831-7. [Abstract] [Full-text]
23. Analysis of gene expression induced by microtubule-disrupting agents in HeLa cells using microarray.
    Cancer Lett. [Abstract] [Full-text]
24. Harshlight: a "corrective make-up" program for microarray chips.
    BMC Bioinformatics, 6(1): 294. [Abstract] [Full-text]
25. An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments.
    BMC Bioinformatics, 6(1): 293. [Abstract] [Full-text]
26. Microarray analysis of androgen-regulated gene expression in testis: the use of the androgen-binding protein (ABP)-transgenic mouse as a model.
    Reprod Biol Endocrinol, 3(1): 70. [Abstract] [Full-text]
27. Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.
    BMC Bioinformatics, 6: 265. [Abstract] [Full-text]
28. Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.
    Environ Microbiol, 8(1): 165-77. [Abstract] [Full-text]
29. Oligonucleotide microarray analysis of differential transporter regulation in the regenerating rat liver.
    Liver Int, 25(6): 1243-58. [Abstract] [Full-text]
30. Microarray technology in the study of obesity and non-alcoholic fatty liver disease.
    Liver Int, 25(6): 1091-6. [Abstract] [Full-text]
31. Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray.
    Environ Microbiol, 8(1): 126-40. [Abstract] [Full-text]
32. MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.
    BMC Bioinformatics, 6: S6. [Abstract] [Full-text]
33. Regularized Least Squares Cancer classifiers from DNA microarray data.
    BMC Bioinformatics, 6: S2. [Abstract] [Full-text]
34. Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.
    BMC Bioinformatics, 6: S14. [Abstract] [Full-text]
35. A quantization method based on threshold optimization for microarray short time series.
    BMC Bioinformatics, 6: S11. [Abstract] [Full-text]
36. Single-cell microarray for analyzing cellular response.
    Anal Chem, 77(24): 8050-6. [Abstract] [Full-text]
37. Screening of target-specific stress-responsive genes for the development of cell-based biosensors using a DNA microarray.
    Anal Chem, 77(24): 8020-6. [Abstract] [Full-text]
38. Nanovolume kinase inhibition assay using a sol-gel-derived multicomponent microarray.
    Anal Chem, 77(24): 8013-9. [Abstract] [Full-text]
39. Microarray analysis of gene expression in cultured skin substitutes compared with native human skin.
    J Invest Dermatol, 125(6): 1286-301. [Abstract] [Full-text]
40. Microarray expression technology: from start to finish.
    Pharmacogenomics, 7(1): 123-34. [Abstract] [Full-text]
41. A cDNA-microarray analysis of camptothecin resistance in glioblastoma cell lines.
    Cancer Lett, 231(1): 74-86. [Abstract] [Full-text]
42. Microarray analysis of the transcriptional responseto single or multiple doses of ionizing radiation in human subcutaneous fibroblasts.
    Radiother Oncol, 77(3): 231-40. [Abstract] [Full-text]
43. The role of microarray technologies in the study of soft tissue tumours.
    Histopathology, 48(1): 22-31. [Abstract] [Full-text]
44. Probabilistic segmentation and intensity estimation for microarray images.
    Biostatistics, 7(1): 85-99. [Abstract] [Full-text]
45. Microarray-based gene expression profiling of retransplanted rat cardiac allografts that develop cardiac allograft vasculopathy.
    J Heart Lung Transplant, 24(12): 2068-74. [Abstract] [Full-text]
46. Microarray analysis of the differential effects of open and laparoscopic surgery on murine splenic T-cells.
    Surgery, 139(1): 92-103. [Abstract] [Full-text]
47. DNA and protein microarray printing on silicon nitride waveguide surfaces.
    Biosens Bioelectron, 21(7): 1252-63. [Abstract] [Full-text]
48. Microarray data analysis: from disarray to consolidation and consensus.
    Nat Rev Genet, 7(1): 55-65. [Abstract] [Full-text]
49. Chemical genomic screening for methylation-silenced genes in gastric cancer cell lines using 5-aza-2'-deoxycytidine treatment and oligonucleotide microarray.
    Cancer Sci, 97(1): 64-71. [Abstract] [Full-text]
50. The proangiogenic capacity of polymorphonuclear neutrophils delineated by microarray technique and by measurement of neovascularization in wounded skin of CD18-deficient mice.
    J Vasc Res, 43(1): 1-11. [Abstract] [Full-text]
51. Microarray analysis of stress-related gene expression in patients with Ménière's disease.
    ORL J Otorhinolaryngol Relat Spec, 67(5): 294-9. [Abstract] [Full-text]
52. Molecular biology of lymphoma in the microarray era.
    Pathology, 37(6): 508-22. [Abstract] [Full-text]
53. Use of a mixed tissue RNA design for performance assessments on multiple microarray formats.
    Nucleic Acids Res, 33(22): e187. [Abstract] [Full-text]
54. Storage and transmission of microarray images.
    Drug Discov Today, 10(23): 1689-95. [Abstract] [Full-text]
55. Microarray-based detection of genetic heterogeneity, antimicrobial resistance, and the viable but nonculturable state in human pathogenic Vibrio spp.
    Proc Natl Acad Sci U S A, 102(52): 19109-14. [Abstract] [Full-text]
56. An evaluation of linear RNA amplification in cDNA microarray gene expression analysis.
    Mol Genet Metab, 87(1): 71-79. [Abstract] [Full-text]
57. Multivariate analysis of microarray data by principal component discriminant analysis: prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12.
    Microbiology, 152: 257-72. [Abstract] [Full-text]
58. Phenotype microarray profiling of Staphylococcus aureus menD and hemB mutants with the small-colony-variant phenotype.
    J Bacteriol, 188(2): 687-93. [Abstract] [Full-text]
59. Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis.
    BMC Bioinformatics, 6(1): 311. [Abstract] [Full-text]

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