Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 3 (March)

1. Two-part permutation tests for DNA methylation and microarray data.
   BMC Bioinformatics, 6(1): 35. [Abstract] [Full-text]
2. Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications.
   Oncogene, 24(10): 1794-801. [Abstract] [Full-text]
3. Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains recently isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray.
   Appl Environ Microbiol, 71(3): 1616-25. [Abstract] [Full-text]
4. 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales".
   Appl Environ Microbiol, 71(3): 1373-86. [Abstract] [Full-text]
5. Microarray analysis of primary endothelial cells challenged with different inflammatory and immune cytokines.
   Cytokine, 29(6): 256-69. [Abstract] [Full-text]
6. An adaptive method for cDNA microarray normalization.
   BMC Bioinformatics, 6(1): 28. [Abstract] [Full-text]
7. Iterative microarray and RNA interference-based interrogation of the SRC-induced invasive phenotype.
   Cancer Res, 65(5): 1814-21. [Abstract] [Full-text]
8. Platform influence on DNA microarray data in postmortem brain research.
   Neurobiol Dis, 18(3): 649-55. [Abstract] [Full-text]
9. Microarray analysis identifies an aberrant expression of apoptosis and DNA damage-regulatory genes in multiple sclerosis.
   Neurobiol Dis, 18(3): 537-50. [Abstract] [Full-text]
10. Distinction of acute lymphoblastic leukemia from acute myeloid leukemia through microarray-based DNA methylation analysis.
    Ann Hematol, 84(4): 236-44. [Abstract] [Full-text]
11. Weighted analysis of microarray gene expression using maximum-likelihood.
    Bioinformatics, 21(6): 723-9. [Abstract] [Full-text]
12. Expression profiling of the estrogen responsive genes in response to phytoestrogens using a customized DNA microarray.
    FEBS Lett, 579(7): 1732-40. [Abstract] [Full-text]
13. Low density DNA microarray for detection of most frequent TP53 missense point mutations.
    BMC Biotechnol, 5(1): 8. [Abstract] [Full-text]
14. A microarray configuration to quantify expression levels and relative abundance of splice variants.
    Nucleic Acids Res, 33(5): e47. [Abstract] [Full-text]
15. Methylation profiles of genes utilizing newly developed CpG island methylation microarray on colorectal cancer patients.
    Nucleic Acids Res, 33(5): e46. [Abstract] [Full-text]
16. A proteomic microarray approach for exploring ligand-initiated nuclear hormone receptor pharmacology, receptor selectivity, and heterodimer functionality.
    Mol Cell Proteomics, 4(3): 267-77. [Abstract] [Full-text]
17. Study of stem cell function using microarray experiments.
    FEBS Lett, 579(8): 1795-801. [Abstract] [Full-text]
18. A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis.
    Mech Dev, 122(3): 355-63. [Abstract] [Full-text]
19. Microarray-based identification of VegT targets in Xenopus.
    Mech Dev, 122(3): 333-54. [Abstract] [Full-text]
20. Analysis of gene expression induced by diethylstilbestrol (DES) in human primitive Mullerian duct cells using microarray.
    Cancer Lett, 220(2): 197-210. [Abstract] [Full-text]
21. Development of a protein microarray using sequence-specific DNA binding domain on DNA chip surface.
    Biochem Biophys Res Commun, 329(4): 1315-9. [Abstract] [Full-text]
22. Histone deacetylase-1 and -3 protein expression in human breast cancer: a tissue microarray analysis.
    Breast Cancer Res Treat, 90(1): 15-23. [Abstract] [Full-text]
23. Phenotypic characterization of BRCA1 and BRCA2 tumors based in a tissue microarray study with 37 immunohistochemical markers.
    Breast Cancer Res Treat, 90(1): 5-14. [Abstract] [Full-text]
24. Gene expression analysis of Gata3-/- mice by using cDNA microarray technology.
    Life Sci, 76(22): 2559-68. [Abstract] [Full-text]
25. Polymer-oligonucleotide conjugate synthesis from an amphiphilic block copolymer. Applications to DNA detection on microarray.
    Bioconjug Chem, 16(2): 265-74. [Abstract] [Full-text]
26. The Anopheles gambiae detoxification chip: a highly specific microarray to study metabolic-based insecticide resistance in malaria vectors.
    Proc Natl Acad Sci U S A, 102(11): 4080-4. [Abstract] [Full-text]
27. Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry.
    Plant Cell Physiol, 46(2): 339-55. [Abstract] [Full-text]
28. Hierarchical Bayes models for cDNA microarray gene expression.
    Biostatistics, 6(2): 279-91. [Abstract] [Full-text]
29. A nonparametric approach to the analysis of longitudinal data via a set of level crossing problems with application to the analysis of microarray time course experiments.
    Biostatistics, 6(2): 271-8. [Abstract] [Full-text]
30. A note on joint versus gene-specific mixed model analysis of microarray gene expression data.
    Biostatistics, 6(2): 183-6. [Abstract] [Full-text]
31. Screening of specific antigens for SARS clinical diagnosis using a protein microarray.
    Analyst, 130(4): 474-82. [Abstract] [Full-text]
32. Weighting by heritability for detection of quantitative trait loci with microarray estimates of gene expression.
    Genome Biol, 6(3): R27. [Abstract] [Full-text]
33. A DNA microarray survey of gene expression in normal human tissues.
    Genome Biol, 6(3): R22. [Abstract] [Full-text]
34. Differential expression of TCEAL1 in esophageal cancers by custom cDNA microarray analysis.
    Dis Esophagus, 18(1): 37-40. [Abstract] [Full-text]
35. Enhanced sensitivity of surface plasmon resonance (SPR) immunoassays using a peroxidase-catalyzed precipitation reaction and its application to a protein microarray.
    J Immunol Methods, 297(1): 125-32. [Abstract] [Full-text]
36. Microarray analysis of immune challenged Drosophila hemocytes.
    Exp Cell Res, 305(1): 145-55. [Abstract] [Full-text]
37. Tumor classification by tissue microarray profiling: random forest clustering applied to renal cell carcinoma.
    Mod Pathol, 18(4): 547-57. [Abstract] [Full-text]
38. Expression of aquaporins and PAX-2 compared to CD10 and cytokeratin 7 in renal neoplasms: a tissue microarray study.
    Mod Pathol, 18(4): 535-40. [Abstract] [Full-text]
39. Claudin-1 is a strong prognostic indicator in stage II colonic cancer: a tissue microarray study.
    Mod Pathol, 18(4): 511-8. [Abstract] [Full-text]
40. Microarray and RT-PCR screening for white spot syndrome virus immediate-early genes in cycloheximide-treated shrimp.
    Virology, 334(2): 327-41. [Abstract] [Full-text]
41. cDNA microarray analysis of endothelial cells subjected to cyclic mechanical strain: importance of motion control.
    Physiol Genomics, 21(1): 124-30. [Abstract] [Full-text]
42. Microarray analysis of selection lines from outbred populations to identify genes involved with nematode parasite resistance in sheep.
    Physiol Genomics, 21(1): 59-69. [Abstract] [Full-text]
43. Androgen-regulated transcripts in the neonatal mouse testis as determined through microarray analysis.
    Biol Reprod, 72(4): 1010-9. [Abstract] [Full-text]
44. Microarray-based gene expression profiling of hematologic malignancies: basic concepts and clinical applications.
    Blood Rev, 19(4): 223-34. [Abstract] [Full-text]
45. On the utility of pooling biological samples in microarray experiments.
    Proc Natl Acad Sci U S A, 102(12): 4252-7. [Abstract] [Full-text]
46. Secondary structure in the target as a confounding factor in synthetic oligomer microarray design.
    BMC Genomics, 6(1): 31. [Abstract] [Full-text]
47. GoArrays: highly dynamic and efficient microarray probe design.
    Bioinformatics, 21(7): 1094-103. [Abstract] [Full-text]
48. Extracting relations between promoter sequences and their strengths from microarray data.
    Bioinformatics, 21(7): 1062-8. [Abstract] [Full-text]
49. Normalization of two-channel microarray experiments: a semiparametric approach.
    Bioinformatics, 21(7): 1078-83. [Abstract] [Full-text]
50. Identifying differentially expressed genes from microarray experiments via statistic synthesis.
    Bioinformatics, 21(7): 1084-93. [Abstract] [Full-text]
51. CK20 and CK7 protein expression in colorectal cancer: demonstration of the utility of a population-based tissue microarray.
    Hum Pathol, 36(3): 275-81. [Abstract] [Full-text]
52. Differential gene expression profiling of human umbilical cord blood-derived mesenchymal stem cells by DNA microarray.
    Stem Cells, 23(4): 584-93. [Abstract] [Full-text]
53. A second field metachronous Merkel cell carcinoma of the lip and the palatine tonsil confirmed by microarray-based comparative genomic hybridisation.
    Virchows Arch, 446(3): 278-86. [Abstract] [Full-text]
54. Gene expression profiling of cathepsin D, metallothioneins-1 and -2, osteopontin, and tenascin-C in a mouse spinal cord injury model by cDNA microarray analysis.
    Acta Neuropathol (Berl), 109(2): 165-80. [Abstract] [Full-text]
55. DNA microarray for rapid detection of mitochondrial DNA haplotypes of chum salmon.
    Mar Biotechnol (NY), 6(5): 430-4. [Abstract] [Full-text]
56. A DNA microarray for identification of virulence and antimicrobial resistance genes in Salmonella serovars and Escherichia coli.
    Mol Cell Probes, 19(3): 195-201. [Abstract] [Full-text]
57. Analysis of host response to bacterial infection using error model based gene expression microarray experiments.
    Nucleic Acids Res, 33(6): e53. [Abstract] [Full-text]

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