Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 4 (April)

1. Lessons from DNA microarray analysis: the gene expression profile of biofilms.
   Curr Opin Microbiol, 8(2): 222-7. [Abstract] [Full-text]
2. Quantitative inference of dynamic regulatory pathways via microarray data.
   BMC Bioinformatics, 6(1): 44. [Abstract] [Full-text]
3. Comprehensive DNA copy number profiling of meningioma using a chromosome 1 tiling path microarray identifies novel candidate tumor suppressor loci.
   Cancer Res, 65(7): 2653-61. [Abstract] [Full-text]
4. Linkage and microarray analyses of susceptibility genes in ACI/Seg rats: a model for prostate cancers in the aged.
   Cancer Res, 65(7): 2610-6. [Abstract] [Full-text]
5. Microarray data analysis of mouse neoplasia.
   Toxicol Pathol, 33(1): 127-35. [Abstract] [Full-text]
6. Progress in protein and antibody microarray technology.
   Drug Discov Today, 10(7): 503-11. [Abstract] [Full-text]
7. Nanodroplet profiling of enzymatic activities in a microarray.
   Bioorg Med Chem Lett, 15(8): 2135-9. [Abstract] [Full-text]
8. A 7872 cDNA microarray and its use in bovine functional genomics.
   Vet Immunol Immunopathol, 105(3): 235-45. [Abstract] [Full-text]
9. Finite mixture model analysis of microarray expression data on samples of uncertain biological type with application to reproductive efficiency.
   Vet Immunol Immunopathol, 105(3): 187-96. [Abstract] [Full-text]
10. Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models.
    Vet Immunol Immunopathol, 105(3): 175-86. [Abstract] [Full-text]
11. Protein chip-based microarray profiling of oxidized low density lipoprotein-treated cells.
    Proteomics, 5(5): 1274-80. [Abstract] [Full-text]
12. Microarray analysis of rat brain gene expression after chronic administration of sodium valproate.
    Brain Res Bull, 65(4): 331-8. [Abstract] [Full-text]
13. An oligonucleotide microarray for transcriptome analysis of Schistosoma mansoni and its application/use to investigate gender-associated gene expression.
    Mol Biochem Parasitol, 141(1): 1-13. [Abstract] [Full-text]
14. DNA microarray analysis of Methanosarcina mazei Go1 reveals adaptation to different methanogenic substrates.
    Mol Genet Genomics. [Abstract] [Full-text]
15. Microarray analysis of fluoro-gold labeled rat dopamine neurons harvested by laser capture microdissection.
    J Neurosci Methods, 143(2): 95-106. [Abstract] [Full-text]
16. Combining Affymetrix microarray results.
    BMC Bioinformatics, 6(1): 57. [Abstract] [Full-text]
17. A qualitative assessment of direct-labeled cDNA products prior to microarray analysis.
    BMC Genomics, 6(1): 36. [Abstract] [Full-text]
18. A microarray search for genes predominantly expressed in human omental adipocytes: adipose tissue as a major production site of serum amyloid A.
    J Clin Endocrinol Metab, 90(4): 2233-9. [Abstract] [Full-text]
19. Evaluation of gene importance in microarray data based upon probability of selection.
    BMC Bioinformatics, 6(1): 67. [Abstract] [Full-text]
20. Quick and simple: quality control of microarray data.
    Bioinformatics, 21(8): 1572-8. [Abstract] [Full-text]
21. LS Bound based gene selection for DNA microarray data.
    Bioinformatics, 21(8): 1559-64. [Abstract] [Full-text]
22. HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression data.
    Bioinformatics, 21(8): 1530-7. [Abstract] [Full-text]
23. OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.
    Bioinformatics, 21(8): 1724-6. [Abstract] [Full-text]
24. Sample size for gene expression microarray experiments.
    Bioinformatics, 21(8): 1502-8. [Abstract] [Full-text]
25. A database of single-nucleotide polymorphisms and a genotyping microarray for genetic epidemiology of lung cancer.
    Exp Lung Res, 31(2): 223-58. [Abstract] [Full-text]
26. Microarray-based identification of differentially expressed genes in hypoxic term human trophoblasts and in placental villi of pregnancies with growth restricted fetuses.
    Placenta, 26(4): 319-28. [Abstract] [Full-text]
27. Genetic basis of phenotypic plasticity for predator-induced morphological defenses in anuran tadpole, Rana pirica, using cDNA subtraction and microarray analysis.
    Biochem Biophys Res Commun, 330(4): 1138-45. [Abstract] [Full-text]
28. An oligonucleotide microarray for the identification and differentiation of trichothecene producing and non-producing Fusarium species occurring on cereal grain.
    J Microbiol Methods, 62(1): 57-69. [Abstract] [Full-text]
29. Design and application of an oligonucleotide microarray for the investigation of compost microbial communities.
    J Microbiol Methods, 62(1): 37-56. [Abstract] [Full-text]
30. Detection of antibiotic resistance genes in different Salmonella serovars by oligonucleotide microarray analysis.
    J Microbiol Methods, 62(1): 13-23. [Abstract] [Full-text]
31. Microarray and real-time RT-PCR analyses of differential human gene expression patterns induced by severe acute respiratory syndrome (SARS) coronavirus infection of Vero cells.
    Microbes Infect, 7(2): 248-59. [Abstract] [Full-text]
32. Gene expression profile in response to Xanthomonas axonopodis pv. manihotis infection in cassava using a cDNA microarray.
    Plant Mol Biol, 57(3): 393-410. [Abstract] [Full-text]
33. Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies.
    Plant Mol Biol, 57(3): 375-91. [Abstract] [Full-text]
34. Multiple and simultaneous detection of specific bacteria in enriched bacterial communities using a DNA microarray chip with randomly generated genomic DNA probes.
    Anal Chem, 77(8): 2311-7. [Abstract] [Full-text]
35. In silico microdissection of microarray data from heterogeneous cell populations.
    BMC Bioinformatics, 6(1): 54. [Abstract] [Full-text]
36. Letrozole-, anastrozole-, and tamoxifen-responsive genes in MCF-7aro cells: a microarray approach.
    Mol Cancer Res, 3(4): 203-18. [Abstract] [Full-text]
37. RealSpot: software validating results from DNA microarray data analysis with spot images.
    Physiol Genomics, 21(2): 284-91. [Abstract] [Full-text]
38. Loss of heterozygosity in childhood acute lymphoblastic leukemia detected by genome-wide microarray single nucleotide polymorphism analysis.
    Cancer Res, 65(8): 3053-8. [Abstract] [Full-text]
39. Survival analysis of microarray expression data by transformation models.
    Comput Biol Chem, 29(2): 91-4. [Abstract] [Full-text]
40. Molecular profile of catabolic versus anabolic treatment regimens of parathyroid hormone (PTH) in rat bone: an analysis by DNA microarray.
    J Cell Biochem, 95(2): 403-18. [Abstract] [Full-text]
41. Gene expression profiling of diabetic and galactosaemic cataractous rat lens by microarray analysis.
    Diabetologia, 48(4): 790-8. [Abstract] [Full-text]
42. Classification of human tumors using gene expression profiles obtained after microarray analysis of fine-needle aspiration biopsy samples.
    Cancer, 105(2): 101-9. [Abstract] [Full-text]
43. Expression profiling using a tumor-specific cDNA microarray predicts the prognosis of intermediate risk neuroblastomas.
    Cancer Cell, 7(4): 337-50. [Abstract] [Full-text]
44. Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.
    FEMS Microbiol Lett, 245(2): 271-8. [Abstract] [Full-text]
45. Microarray analysis of the Df1 mouse model of the 22q11 deletion syndrome.
    Hum Genet, 116(6): 486-96. [Abstract] [Full-text]
46. Immune prevention of mammary carcinogenesis in HER-2/neu transgenic mice: a microarray scenario.
    Cancer Immunol Immunother, 54(6): 599-610. [Abstract] [Full-text]
47. Identification of differentially expressed genes in human pineal parenchymal tumors by microarray analysis.
    Acta Neuropathol (Berl), 109(3): 306-13. [Abstract] [Full-text]
48. Microarray-based comparison of three amplification methods for nanogram amounts of total RNA.
    Am J Physiol Cell Physiol, 288(5): C1179-89. [Abstract] [Full-text]
49. Tissue microarray analysis of multiple gene expression in intestinal metaplasia, dysplasia and carcinoma of the stomach.
    Histopathology, 46(5): 505-14. [Abstract] [Full-text]
50. Proteomic analysis of mantle-cell lymphoma by protein microarray.
    Blood, 105(9): 3722-30. [Abstract] [Full-text]
51. Correlation of cyclooxygenase-2 (COX-2) and aromatase expression in human endometrial cancer: tissue microarray analysis.
    Am J Obstet Gynecol, 192(4): 1262-71; discussion 1271-3. [Abstract] [Full-text]
52. Microarray and proteomics analyses of human intestinal epithelial cells treated with the Aeromonas hydrophila cytotoxic enterotoxin.
    Infect Immun, 73(5): 2628-43. [Abstract] [Full-text]
53. Microarray studies of psychostimulant-induced changes in gene expression.
    Addict Biol, 10(1): 101-18. [Abstract] [Full-text]
54. Statistical analysis of microarray data.
    Addict Biol, 10(1): 23-35. [Abstract] [Full-text]
55. Issues for consideration in the analysis of microarray data in behavioural studies.
    Addict Biol, 10(1): 15-21. [Abstract] [Full-text]
56. DNA microarray-based gene expression profiles of cytomegalovirus infection and acute rejection in liver transplants.
    Transplant Proc, 37(2): 1227-9. [Abstract] [Full-text]
57. Rapid genotyping of blood group antigens by multiplex polymerase chain reaction and DNA microarray hybridization.
    Transfusion, 45(5): 667-79. [Abstract] [Full-text]
58. Microarray-based genotyping for blood groups: comparison of gene array and 5'-nuclease assay techniques with human platelet antigen as a model.
    Transfusion, 45(5): 654-9. [Abstract] [Full-text]
59. Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
    BMC Bioinformatics, 6(1): 80. [Abstract] [Full-text]
60. Gene expression following traumatic brain injury in humans: analysis by microarray.
    J Clin Neurosci, 12(3): 284-90. [Abstract] [Full-text]
61. BAC-based PCR fragment microarray: high-resolution detection of chromosomal deletion and duplication breakpoints.
    Hum Mutat, 25(5): 476-82. [Abstract] [Full-text]
62. Oligonucleotide microarray for HLA-DRB1 genotyping: preparation and clinical evaluation.
    Tissue Antigens, 65(5): 467-73. [Abstract] [Full-text]
63. Identification of differentially expressed genes between osteoarthritic and normal trabecular bone from the intertrochanteric region of the proximal femur using cDNA microarray analysis.
    Bone, 36(4): 635-44. [Abstract] [Full-text]
64. Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora.
    Mol Genet Genomics, 273(2): 137-49. [Abstract] [Full-text]
65. Empirical Bayes screening of many p-values with applications to microarray studies.
    Bioinformatics, 21(9): 1987-94. [Abstract] [Full-text]
66. Evaluation of the gene-specific dye bias in cDNA microarray experiments.
    Bioinformatics, 21(9): 1995-2000. [Abstract] [Full-text]
67. Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data.
    Bioinformatics, 21(9): 1971-8. [Abstract] [Full-text]
68. Use of within-array replicate spots for assessing differential expression in microarray experiments.
    Bioinformatics, 21(9): 2067-75. [Abstract] [Full-text]
69. MAGIC Tool: integrated microarray data analysis.
    Bioinformatics, 21(9): 2114-5. [Abstract] [Full-text]
70. Detecting clusters of different geometrical shapes in microarray gene expression data.
    Bioinformatics, 21(9): 1927-34. [Abstract] [Full-text]
71. Robust estimation of protein expression ratios with lysate microarray technology.
    Bioinformatics, 21(9): 1935-42. [Abstract] [Full-text]
72. MACAT--microarray chromosome analysis tool.
    Bioinformatics, 21(9): 2112-3. [Abstract] [Full-text]
73. Comparative host gene transcription by microarray analysis early after infection of the Huh7 cell line by severe acute respiratory syndrome coronavirus and human coronavirus 229E.
    J Virol, 79(10): 6180-93. [Abstract] [Full-text]
74. Gene expression profiling in hypothalamus of immobilization-stressed mouse using cDNA microarray.
    Brain Res Mol Brain Res, 135(1): 293-300. [Abstract] [Full-text]
75. Epigenetic hypothesis tests for methylation and acetylation in a triple microarray system.
    J Comput Biol, 12(3): 370-90. [Abstract] [Full-text]
76. Microarray-based detection of mannose-binding lectin 2 (MBL2) polymorphisms in a routine clinical setting.
    Genet Test, 9(1): 6-13. [Abstract] [Full-text]
77. A genome-wide scalable SNP genotyping assay using microarray technology.
    Nat Genet, 37(5): 549-54. [Abstract] [Full-text]
78. The microarray expression analysis identifies BAX as a mediator of beta-carotene effects on apoptosis.
    Nutr Cancer, 51(2): 226-35. [Abstract] [Full-text]
79. Copy number gains on 22q13 in adenoid cystic carcinoma of the salivary gland revealed by comparative genomic hybridization and tissue microarray analysis.
    Cancer Genet Cytogenet, 159(1): 89-95. [Abstract] [Full-text]
80. Microarray-based comparative genomic hybridization of pheochromocytoma cell lines from neurofibromatosis knockout mice reveals genetic alterations similar to those in human pheochromocytomas.
    Cancer Genet Cytogenet, 159(1): 27-31. [Abstract] [Full-text]
81. Purity for clarity: the need for purification of tumor cells in DNA microarray studies.
    Leukemia, 19(4): 618-27. [Abstract] [Full-text]

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