Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 6 (June)

1. Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data.
   Genes Immun, 6(4): 319-31. [Abstract] [Full-text]
2. Microarray analysis identifies a death-from-cancer signature predicting therapy failure in patients with multiple types of cancer.
   J Clin Invest, 115(6): 1503-21. [Abstract] [Full-text]
3. Microarray analysis of endometrial carcinomas and mixed mullerian tumors reveals distinct gene expression profiles associated with different histologic types of uterine cancer.
   Clin Cancer Res, 11(11): 4056-66. [Abstract] [Full-text]
4. A study of inter-lab and inter-platform agreement of DNA microarray data.
   BMC Genomics, 6(1): 71. [Abstract] [Full-text]
5. A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription.
   Plant Cell, 17(6): 1641-57. [Abstract] [Full-text]
6. A microarray analysis of genes involved in relating egg production to nutritional intake in Drosophila melanogaster.
   Cell Death Differ, 12(5): 429-40. [Abstract] [Full-text]
7. An RNA interference model of RPS19 deficiency in Diamond-Blackfan anemia recapitulates defective hematopoiesis and rescue by dexamethasone: identification of dexamethasone-responsive genes by microarray.
   Blood, 105(12): 4620-6. [Abstract] [Full-text]
8. Microarray analysis of gene expression in germinating barley embryos (Hordeum vulgare L.).
   Funct Integr Genomics, 5(3): 155-62. [Abstract] [Full-text]
9. Monitoring synaptogenesis in the developing mouse cerebellum with an original oligonucleotide microarray.
   J Neurosci Res, 80(6): 777-88. [Abstract] [Full-text]
10. Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate?
    BMC Genomics, 6(1): 59. [Abstract] [Full-text]
11. Parallel detection and quantification using nine immunoassays in a protein microarray for drug from serum samples.
    Biomed Microdevices, 7(2): 143-6. [Abstract] [Full-text]
12. Identification of germ plasm-enriched mRNAs in Drosophila melanogaster by the cDNA microarray technique.
    Gene Expr Patterns, 5(5): 717-23. [Abstract] [Full-text]
13. Panorama Ab Microarray Cell Signaling kit: a unique tool for protein expression analysis.
    Proteomics, 5(9): 2412-6. [Abstract] [Full-text]
14. Localization of a putative low-penetrance ependymoma susceptibility locus to 22q11 using a chromosome 22 tiling-path genomic microarray.
    Genes Chromosomes Cancer, 43(4): 329-38. [Abstract] [Full-text]
15. Donuts, scratches and blanks: robust model-based segmentation of microarray images.
    Bioinformatics, 21(12): 2875-82. [Abstract] [Full-text]
16. Improved representation of gene markers on microarray by PCR-Select subtracted cDNA targets.
    Brain Res Mol Brain Res, 137(1): 110-8. [Abstract] [Full-text]
17. Methamphetamine modulation of gene expression in the brain: analysis using customized cDNA microarray system with the mouse homologues of KIAA genes.
    Brain Res Mol Brain Res, 137(1): 40-6. [Abstract] [Full-text]
18. Profiling candidate genes involved in wax biosynthesis in Arabidopsis thaliana by microarray analysis.
    Biochim Biophys Acta, 1734(3): 247-58. [Abstract] [Full-text]
19. Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data.
    BMC Genomics, 6(1): 72. [Abstract] [Full-text]
20. Gene selection for microarray data analysis using principal component analysis.
    Stat Med, 24(13): 2069-87. [Abstract] [Full-text]
21. Mobile classification in microarray experiments.
    Scand J Immunol, 62: 84-91. [Abstract] [Full-text]
22. Limits of predictive models using microarray data for breast cancer clinical treatment outcome.
    J Natl Cancer Inst, 97(12): 927-30. [Abstract] [Full-text]
23. Genomic analysis of vaccine-derived poliovirus strains in stool specimens by combination of full-length PCR and oligonucleotide microarray hybridization.
    J Clin Microbiol, 43(6): 2886-94. [Abstract] [Full-text]
24. Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.
    Proc Natl Acad Sci U S A, 102(24): 8633-8. [Abstract] [Full-text]
25. Development of a sensitive, colorometric microarray assay for allergen-responsive human IgE.
    J Immunol Methods, 300(1): 24-31. [Abstract] [Full-text]
26. Evaluation of thin films of agarose on glass for hybridization of DNA to identify plant pathogens with microarray technology.
    Anal Biochem, 342(1): 93-102. [Abstract] [Full-text]
27. Cooperativity of paired oligonucleotide probes for microarray hybridization assays.
    Anal Biochem, 342(1): 59-68. [Abstract] [Full-text]
28. False discovery rate, sensitivity and sample size for microarray studies.
    Bioinformatics, 21(13): 3017-24. [Abstract] [Full-text]
29. Segmentation of cDNA microarray spots using markov random field modeling.
    Bioinformatics, 21(13): 2994-3000. [Abstract] [Full-text]
30. High-throughput protein expression analysis using tissue microarray technology of a large well-characterised series identifies biologically distinct classes of breast cancer confirming recent cDNA expression analyses.
    Int J Cancer, 116(3): 340-50. [Abstract] [Full-text]
31. Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data.
    Bioinformatics, 21(13): 3001-8. [Abstract] [Full-text]
32. Robust classification modeling on microarray data using misclassification penalized posterior.
    Bioinformatics, 21: i423-i430. [Abstract] [Full-text]
33. GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.
    Bioinformatics, 21: i222-i231. [Abstract] [Full-text]
34. Multi-way clustering of microarray data using probabilistic sparse matrix factorization.
    Bioinformatics, 21: i144-i151. [Abstract] [Full-text]
35. Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.
    Genome Biol, 6(6): R52. [Abstract] [Full-text]
36. Molecular dissection of a medicinal herb with anti-tumor activity by oligonucleotide microarray.
    Life Sci, 77(9): 991-1002. [Abstract] [Full-text]
37. A microarray study to characterize the molecular mechanism of TIMP-3-mediated tumor rejection.
    Mol Ther, 12(1): 144-52. [Abstract] [Full-text]
38. Microarray analysis of genes in fetal central nervous system after ethylnitrosourea administration.
    Birth Defects Res B Dev Reprod Toxicol, 74(3): 255-60. [Abstract] [Full-text]
39. The effects of normalization on the correlation structure of microarray data.
    BMC Bioinformatics, 6(1): 120. [Abstract] [Full-text]
40. Optimising two-dye microarray designs for estimating associations with a quantitative trait.
    J Biotechnol, 118(1): 1-8. [Abstract] [Full-text]
41. Visualization methods for statistical analysis of microarray clusters.
    BMC Bioinformatics, 6(1): 115. [Abstract] [Full-text]
42. Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself.
    J Bacteriol, 187(13): 4381-91. [Abstract] [Full-text]
43. Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes.
    Dev Dyn, 233(3): 1163-72. [Abstract] [Full-text]
44. Identification of novel and known oocyte-specific genes using complementary DNA subtraction and microarray analysis in three different species.
    Biol Reprod, 73(1): 63-71. [Abstract] [Full-text]
45. A DNA microarray for the authentication of toxic traditional Chinese medicinal plants.
    Planta Med, 71(6): 580-4. [Abstract] [Full-text]
46. Development of a focused microarray to assess human embryonic stem cell differentiation.
    Stem Cells Dev, 14(3): 270-84. [Abstract] [Full-text]
47. Microarray analysis of quorum-sensing-regulated genes in Porphyromonas gingivalis.
    Infect Immun, 73(7): 4146-54. [Abstract] [Full-text]
48. An association study of the N-methyl-D-aspartate receptor NR1 subunit gene (GRIN1) and NR2B subunit gene (GRIN2B) in schizophrenia with universal DNA microarray.
    Eur J Hum Genet, 13(7): 807-14. [Abstract] [Full-text]
49. Gene Expression in Florida Red Tide Dinoflagellate Karenia brevis: Analysis of an Expressed Sequence Tag Library and Development of DNA Microarray.
    Mar Biotechnol (NY). [Abstract] [Full-text]
50. High throughput screening of meningioma biomarkers using a tissue microarray.
    J Neurooncol, 73(3): 219-23. [Abstract] [Full-text]
51. MIDAW: a web tool for statistical analysis of microarray data.
    Nucleic Acids Res, 33: W644-9. [Abstract] [Full-text]
52. VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.
    Nucleic Acids Res, 33: W627-32. [Abstract] [Full-text]
53. ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics.
    Nucleic Acids Res, 33: W621-6. [Abstract] [Full-text]
54. GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
    Nucleic Acids Res, 33: W616-20. [Abstract] [Full-text]
55. OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.
    Nucleic Acids Res, 33: W611-5. [Abstract] [Full-text]
56. Borrowing information from relevant microarray studies for sample classification using weighted partial least squares.
    Comput Biol Chem, 29(3): 204-11. [Abstract] [Full-text]
57. Microarray profiles of human basal cell carcinoma: insights into tumor growth and behavior.
    J Dermatol Sci, 39(1): 39-51. [Abstract] [Full-text]
58. Gene expression profiling of human atrial myocardium with atrial fibrillation by DNA microarray analysis.
    Int J Cardiol, 102(2): 233-8. [Abstract] [Full-text]
59. Designing a microarray experiment to estimate dominance in maize (Zea mays L.).
    Theor Appl Genet, 111(1): 57-64. [Abstract] [Full-text]
60. Rapid diagnosis of bacterial sepsis with PCR amplification and microarray hybridization in 16S rRNA gene.
    Pediatr Res, 58(1): 143-8. [Abstract] [Full-text]
61. A guide to issues in microarray analysis: application to endometrial biology.
    Reproduction, 130(1): 1-13. [Abstract] [Full-text]
62. Microarray analysis of tumour antigen expression in presentation acute myeloid leukaemia.
    Biochem Biophys Res Commun, 333(3): 703-13. [Abstract] [Full-text]
63. Enhanced microarray performance using low complexity representations of the transcriptome.
    Nucleic Acids Res, 33(11): e100. [Abstract] [Full-text]
64. A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data.
    BMC Genomics, 6(1): 77. [Abstract] [Full-text]
65. M@CBETH: a microarray classification benchmarking tool.
    Bioinformatics, 21(14): 3185-6. [Abstract] [Full-text]
66. Inhibitory effect of c-Myc on p53-induced apoptosis in leukemia cells. Microarray analysis reveals defective induction of p53 target genes and upregulation of chaperone genes.
    Oncogene, 24(28): 4559-71. [Abstract] [Full-text]
67. Sample size for FDR-control in microarray data analysis.
    Bioinformatics, 21(14): 3097-104. [Abstract] [Full-text]

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