Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 2 (2005), Issue 8 (August)

1. Microarray analysis of early adipogenesis in C3H10T1/2 cells: cooperative inhibitory effects of growth factors and 2,3,7,8-tetrachlorodibenzo-p-dioxin.
   Toxicol Appl Pharmacol, 207(1): 39-58. [Abstract] [Full-text]
2. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) alters the mRNA expression of critical genes associated with cholesterol metabolism, bile acid biosynthesis, and bile transport in rat liver: a microarray study.
   Toxicol Appl Pharmacol, 207(1): 1-24. [Abstract] [Full-text]
3. Evidence that the p53 negative / Bcl-2 positive phenotype is an independent indicator of good prognosis in colorectal cancer: a tissue microarray study of 460 patients.
   World J Surg Oncol, 3: 47. [Abstract] [Full-text]
4. cDNA microarray analysis assists in diagnosis of malignant intrarenal pheochromocytoma originally masquerading as a renal cell carcinoma.
   J Med Genet, 42(8): e48. [Abstract] [Full-text]
5. cDNA microarray reveals signaling pathways involved in hormones expression of human pituitary.
   Gen Comp Endocrinol, 143(2): 184-92. [Abstract] [Full-text]
6. Light pulse-induced heme and iron-associated transcripts in mouse brain: a microarray analysis.
   Chronobiol Int, 22(3): 455-71. [Abstract] [Full-text]
7. SNP microarray analysis for genome-wide detection of crossover regions.
   Hum Genet, 117(4): 389-97. [Abstract] [Full-text]
8. Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach.
   Theor Biol Med Model, 2: 23. [Abstract] [Full-text]
9. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
   Bioinformatics, 21(16): 3439-40. [Abstract] [Full-text]
10. Approaches to bacterial RNA isolation and purification for microarray analysis of Escherichia coli K1 interaction with human brain microvascular endothelial cells.
    J Clin Microbiol, 43(8): 4197-9. [Abstract] [Full-text]
11. Simultaneous detection of four human pathogenic microsporidian species from clinical samples by oligonucleotide microarray.
    J Clin Microbiol, 43(8): 4121-8. [Abstract] [Full-text]
12. Pilot study to evaluate microarray hybridization as a tool for Salmonella enterica serovar Typhimurium strain differentiation.
    J Clin Microbiol, 43(8): 4092-106. [Abstract] [Full-text]
13. The human ovarian teratocarcinoma cell line PA-1 demonstrates a single translocation: analysis with fluorescence in situ hybridization, spectral karyotyping, and bacterial artificial chromosome microarray.
    Cancer Genet Cytogenet, 161(1): 63-9. [Abstract] [Full-text]
14. Biomarker discovery in microarray gene expression data with Gaussian processes.
    Bioinformatics, 21(16): 3385-93. [Abstract] [Full-text]
15. Electrochemically directed synthesis of oligonucleotides for DNA microarray fabrication.
    Nucleic Acids Res, 33(14): e125. [Abstract] [Full-text]
16. Comparing independent microarray studies: the case of human embryonic stem cells.
    BMC Genomics, 6: 99. [Abstract] [Full-text]
17. E-Cadherin and beta-Catenin expression in early stage cervical carcinoma: a tissue microarray study of 147 cases.
    World J Surg Oncol, 3(1): 38. [Abstract] [Full-text]
18. Correction: Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.
    Genome Biol, 6(8): 403. [Abstract] [Full-text]
19. Proteasome inhibition by lactacystin in primary neuronal cells induces both potentially neuroprotective and pro-apoptotic transcriptional responses: a microarray analysis.
    J Neurochem, 94(4): 943-56. [Abstract] [Full-text]
20. Transcriptome analysis in blastocyst hatching by cDNA microarray.
    Hum Reprod, 20(9): 2492-501. [Abstract] [Full-text]
21. The use of cDNA microarray to identify differentially expressed labor-associated genes within the human myometrium during labor.
    Am J Obstet Gynecol, 193(2): 404-13. [Abstract] [Full-text]
22. Microarray analysis of healing rat Achilles tendon: Evidence for glutamate signalling mechanisms and embryonic gene expression in healing tendon tissue.
    J Orthop Res. [Abstract] [Full-text]
23. Multiplex approaches in protein microarray technology.
    Expert Rev Proteomics, 2(4): 499-510. [Abstract] [Full-text]
24. Microarray analysis of the genes induced by tetracycline-regulated expression of NDRF/NeuroD2 in P19 cells.
    Biochem Biophys Res Commun, 335(2): 458-68. [Abstract] [Full-text]
25. Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm.
    BMC Bioinformatics, 6: 195. [Abstract] [Full-text]
26. Microarray analysis identifies apoptosis regulatory gene expression in HCT116 cells infected with thermostable direct hemolysin-deletion mutant of Vibrio parahaemolyticus.
    Biochem Biophys Res Commun, 335(2): 328-34. [Abstract] [Full-text]
27. DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples.
    Water Res, 39(14): 3229-38. [Abstract] [Full-text]
28. A microarray study of post-mortem mRNA degradation in mouse brain tissue.
    Brain Res Mol Brain Res, 138(2): 164-77. [Abstract] [Full-text]
29. Pooling samples within microarray studies: a comparative analysis of rat liver transcription response to prototypical toxicants.
    Physiol Genomics, 22(3): 346-55. [Abstract] [Full-text]
30. Identification of inactivating mutations in the JAK1, SYNJ2, and CLPTM1 genes in prostate cancer cells using inhibition of nonsense-mediated decay and microarray analysis.
    Cancer Genet Cytogenet, 161(2): 97-103. [Abstract] [Full-text]
31. Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma.
    BMC Cancer, 5: 77. [Abstract] [Full-text]
32. Storing, linking, and mining microarray databases using SRS.
    BMC Bioinformatics, 6: 192. [Abstract] [Full-text]
33. Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data.
    BMC Bioinformatics, 6: 187. [Abstract] [Full-text]
34. Characterization of the genome composition of Bartonella koehlerae by microarray comparative genomic hybridization profiling.
    J Bacteriol, 187(17): 6155-65. [Abstract] [Full-text]
35. Microarray annotation and biological information on function.
    Methods Inf Med, 44(3): 468-72. [Abstract] [Full-text]
36. Sample selection for microarray gene expression studies.
    Methods Inf Med, 44(3): 461-7. [Abstract] [Full-text]
37. Clustering algorithms and other exploratory methods for microarray data analysis.
    Methods Inf Med, 44(3): 444-8. [Abstract] [Full-text]
38. Multiplicity issues in microarray experiments.
    Methods Inf Med, 44(3): 431-7. [Abstract] [Full-text]
39. Design and analysis of two-color microarray experiments using linear models.
    Methods Inf Med, 44(3): 423-30. [Abstract] [Full-text]
40. Normalization for two-channel microarray data.
    Methods Inf Med, 44(3): 418-22. [Abstract] [Full-text]
41. Quality control for microarray experiments.
    Methods Inf Med, 44(3): 408-13. [Abstract] [Full-text]
42. Two-color microarray experiments. Technology and sources of variance.
    Methods Inf Med, 44(3): 400-4. [Abstract] [Full-text]
43. Tutorial on microarray gene expression experiments. An introduction.
    Methods Inf Med, 44(3): 392-9. [Abstract] [Full-text]
44. Cholera toxin induces a transient depletion of CD8+ intraepithelial lymphocytes in the rat small intestine as detected by microarray and immunohistochemistry.
    Infect Immun, 73(9): 5595-602. [Abstract] [Full-text]
45. Microarray-based detection of Salmonella enterica serovar Typhimurium transposon mutants that cannot survive in macrophages and mice.
    Infect Immun, 73(9): 5438-49. [Abstract] [Full-text]
46. Claudin expression in gastric adenocarcinomas: a tissue microarray study with prognostic correlation.
    Hum Pathol, 36(8): 886-92. [Abstract] [Full-text]
47. A human ImmunoChip cDNA microarray provides a comprehensive tool to study immune responses.
    J Immunol Methods, 303(1): 122-34. [Abstract] [Full-text]
48. Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass spectrometry data.
    Proteomics, 5(13): 3278-91. [Abstract] [Full-text]
49. Splenic marginal zone lymphoma: proposal of new diagnostic and prognostic markers identified after tissue and cDNA microarray analysis.
    Blood, 106(5): 1831-8. [Abstract] [Full-text]
50. A microarray analysis of potential genes underlying the neurosensitivity of mice to propofol.
    Anesth Analg, 101(3): 697-704, table of contents. [Abstract] [Full-text]
51. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms.
    Bioinformatics, 21(17): 3524-9. [Abstract] [Full-text]
52. Automated Microarray Image Analysis Toolbox for MATLAB.
    Bioinformatics, 21(17): 3578-9. [Abstract] [Full-text]
53. Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis.
    Dev Biol, 284(2): 536-50. [Abstract] [Full-text]
54. goCluster integrates statistical analysis and functional interpretation of microarray expression data.
    Bioinformatics, 21(17): 3575-7. [Abstract] [Full-text]
55. Increased power of microarray analysis by use of an algorithm based on a multivariate procedure.
    Bioinformatics, 21(17): 3530-4. [Abstract] [Full-text]
56. High-resolution cDNA microarray-based comparative genomic hybridization analysis in neuroblastoma.
    Cancer Lett, 228(1): 71-81. [Abstract] [Full-text]
57. Application of microarray-based technology to neuroblastoma.
    Cancer Lett, 228(1): 13-20. [Abstract] [Full-text]
58. A review of DNA microarray analysis of human neuroblastomas.
    Cancer Lett, 228(1): 5-11. [Abstract] [Full-text]
59. Microarray analysis reveals vegetative molecular phenotypes of Arabidopsis flowering-time mutants.
    Plant Cell Physiol, 46(8): 1190-201. [Abstract] [Full-text]
60. High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).
    BMC Bioinformatics, 6: 168. [Abstract] [Full-text]
61. Genotyping microarray (disease chip) for Leber congenital amaurosis: detection of modifier alleles.
    Invest Ophthalmol Vis Sci, 46(9): 3052-9. [Abstract] [Full-text]
62. An automated procedure to properly handle digital images in large scale tissue microarray experiments.
    Comput Methods Programs Biomed, 79(3): 197-208. [Abstract] [Full-text]
63. Mesorectal spread and micrometastasis of rectal cancer studied with large slice technique and tissue microarray.
    J Surg Oncol, 91(3): 167-72. [Abstract] [Full-text]
64. Microarray analysis of gene expression during epithelial-mesenchymal transformation.
    Dev Dyn, 234(1): 132-42. [Abstract] [Full-text]
65. Neurogenic potential of human mesenchymal stem cells revisited: analysis by immunostaining, time-lapse video and microarray.
    J Cell Sci, 118: 3925-36. [Abstract] [Full-text]
66. Microarray-based detection of protein binding and functionality by gold nanoparticle probes.
    Anal Chem, 77(17): 5770-4. [Abstract] [Full-text]
67. Development of a microfluidic platform with an optical imaging microarray capable of attomolar target DNA detection.
    Anal Chem, 77(17): 5583-8. [Abstract] [Full-text]

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