Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 3 (2006), Issue 10 (October)

1. Microarray analysis of Tbx5-induced genes expressed in the developing heart.
   Dev Dyn, 235(10): 2868-80. [Abstract] [Full-text]
2. Multiplex-PCR and oligonucleotide microarray for detection of eight different herpesviruses from clinical specimens.
   J Clin Virol, 37(2): 83-90. [Abstract] [Full-text]
3. Characterization and sequence verification of thiolated deoxyoligonucleotides used for microarray construction.
   J Am Soc Mass Spectrom, 17(10): 1396-400. [Abstract] [Full-text]
4. Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution.
   Biol Direct, 1: 27. [Abstract] [Full-text]
5. Analysis of human leukaemias and lymphomas using extensive immunophenotypes from an antibody microarray.
   Br J Haematol, 135(2): 184-97. [Abstract] [Full-text]
6. Biologic significance of fascin expression in clear cell renal cell carcinoma: systematic analysis of primary and metastatic tumor tissues using a tissue microarray technique.
   Urology, 68(3): 518-22. [Abstract] [Full-text]
7. Identification of genes associated with ovarian cancer metastasis using microarray expression analysis.
   Int J Gynecol Cancer, 16(5): 1733-45. [Abstract] [Full-text]
8. Microarray RNA transcriptional profiling: part II. Analytical considerations and annotation.
   Expert Rev Mol Diagn, 6(5): 703-15. [Abstract] [Full-text]
9. Transcriptome analysis of fetal metatarsal long bones by microarray, as a model for endochondral bone formation.
   Biochim Biophys Acta, 1763(10): 1031-9. [Abstract] [Full-text]
10. Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis.
    Physiol Genomics, 27(1): 42-53. [Abstract] [Full-text]
11. Development and validation of a bovine macrophage specific cDNA microarray.
    BMC Genomics, 7: 224. [Abstract] [Full-text]
12. Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites.
    Genome Res, 16(10): 1310-9. [Abstract] [Full-text]
13. MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies.
    BMC Genomics, 7: 240. [Abstract] [Full-text]
14. Genotyping of measles virus in clinical specimens on the basis of oligonucleotide microarray hybridization patterns.
    J Clin Microbiol, 44(10): 3752-9. [Abstract] [Full-text]
15. Identification of virulence genes linked with diarrhea due to atypical enteropathogenic Escherichia coli by DNA microarray analysis and PCR.
    J Clin Microbiol, 44(10): 3703-11. [Abstract] [Full-text]
16. Breast cancer expression profiling: the impact of microarray testing on clinical decision making.
    Expert Opin Pharmacother, 7(15): 2069-78. [Abstract] [Full-text]
17. Identification of novel candidate target genes in amplicons of Glioblastoma multiforme tumors detected by expression and CGH microarray profiling.
    Mol Cancer, 5: 39. [Abstract] [Full-text]
18. Identification of Nrf2-regulated genes induced by chemopreventive isothiocyanate PEITC by oligonucleotide microarray.
    Life Sci, 79(20): 1944-55. [Abstract] [Full-text]
19. Tissue microarray analysis of interleukin-20 expression.
    Cytokine, 35(1): 44-52. [Abstract] [Full-text]
20. Utilising the left-helical conformation of L-DNA for analysing different marker types on a single universal microarray platform.
    Nucleic Acids Res. [Abstract] [Full-text]
21. Understanding metastatic SCCHN cells from unique genotypes to phenotypes with the aid of an animal model and DNA microarray analysis.
    Clin Exp Metastasis. [Abstract] [Full-text]
22. Microarray analysis of regional cellular responses to local mechanical stress in acute lung injury.
    Am J Physiol Lung Cell Mol Physiol, 291(5): L851-61. [Abstract] [Full-text]
23. Microarray Analysis of the Effects of a gamma-protein Kinase C Null Mutation on Gene Expression in Striatum: A Role for Transthyretin in Mutant Phenotypes.
    Behav Genet, 36(6): 869-81. [Abstract] [Full-text]
24. Evaluation and comparison of gene clustering methods in microarray analysis.
    Bioinformatics, 22(19): 2405-12. [Abstract] [Full-text]
25. Reliable gene signatures for microarray classification: assessment of stability and performance.
    Bioinformatics, 22(19): 2356-63. [Abstract] [Full-text]
26. Variance stabilization and normalization for one-color microarray data using a data-driven multiscale approach.
    Bioinformatics, 22(20): 2547-53. [Abstract] [Full-text]
27. Semi-supervised learning via penalized mixture model with application to microarray sample classification.
    Bioinformatics, 22(19): 2388-95. [Abstract] [Full-text]
28. Inferring gene regulatory networks from multiple microarray datasets.
    Bioinformatics, 22(19): 2413-20. [Abstract] [Full-text]
29. MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
    Bioinformatics, 22(20): 2554-5. [Abstract] [Full-text]
30. Group testing for pathway analysis improves comparability of different microarray datasets.
    Bioinformatics, 22(20): 2500-6. [Abstract] [Full-text]
31. Rat toxicogenomic study reveals analytical consistency across microarray platforms.
    Nat Biotechnol, 24(9): 1162-1169. [Abstract] [Full-text]
32. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.
    Nat Biotechnol, 24(9): 1151-1161. [Abstract] [Full-text]
33. Identification of estrogen-regulated genes by microarray analysis of the uterus of immature rats exposed to endocrine disrupting chemicals.
    Reprod Biol Endocrinol, 4: 49. [Abstract] [Full-text]
34. Analysis with respect to instrumental variables for the exploration of microarray data structures.
    BMC Bioinformatics, 7: 422. [Abstract] [Full-text]
35. Multiple microarray platforms utilized for hepatic gene expression profiling of GH transgenic coho salmon with and without ration restriction.
    J Mol Endocrinol, 37(2): 259-82. [Abstract] [Full-text]
36. Microarray analysis of Akt1 activation in transgenic mouse hearts reveals transcript expression profiles associated with compensatory hypertrophy and failure.
    Physiol Genomics, 27(2): 156-70. [Abstract] [Full-text]
37. Whole-genome microarray in Arabidopsis facilitates global analysis of retained introns.
    DNA Res, 13(3): 111-21. [Abstract] [Full-text]
38. An improved gel-based DNA microarray method for detecting single nucleotide mismatch.
    Electrophoresis, 27(19): 3904-15. [Abstract] [Full-text]
39. Glycan microarray technologies: tools to survey host specificity of influenza viruses.
    Nat Rev Microbiol, 4(11): 857-64. [Abstract] [Full-text]
40. Translating microarray data for diagnostic testing in childhood leukaemia.
    BMC Cancer, 6: 229. [Abstract] [Full-text]
41. Intratumoral heterogeneity of her-2/neu in invasive mammary carcinomas using fluorescence in-situ hybridization and tissue microarray.
    Int J Surg Pathol, 14(4): 279-84. [Abstract] [Full-text]
42. Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples.
    J Histochem Cytochem, 54(11): 1229-37. [Abstract] [Full-text]
43. Fine-needle aspiration biopsy of non-Hodgkin lymphoma for use in expression microarray analysis.
    Cancer, 108(5): 311-8. [Abstract] [Full-text]
44. Use of DNA microarray technology and gene expression profiles to investigate the pathogenesis, cell biology, antifungal susceptibility and diagnosis of Candida albicans.
    FEMS Yeast Res, 6(7): 987-98. [Abstract] [Full-text]
45. Transcriptomics tool for the human Schistosoma blood flukes using microarray gene expression profiling.
    Exp Parasitol, 114(3): 160-72. [Abstract] [Full-text]
46. Microarray analysis of differentially expressed genes after exposure of normal human fibroblasts to ionizing radiation from an external source and from DNA-incorporated iodine-125 radionuclide.
    Gene, 382: 47-56. [Abstract] [Full-text]
47. Evaluation of two methods for generating cRNA for microarray experiments from nanogram amounts of total RNA.
    Anal Biochem, 358(1): 111-9. [Abstract] [Full-text]
48. A microarray approach identifies ANT, OS-D and takeout-like genes as differentially regulated in alate and apterous morphs of the green peach aphid Myzus persicae (Sulzer).
    Insect Biochem Mol Biol, 36(11): 857-68. [Abstract] [Full-text]
49. Microarray analysis of gene-expression profile in hepatocellular carcinoma cell, BEL-7402, with stable suppression of hLRH-1 via a DNA vector-based RNA interference.
    Yi Chuan Xue Bao, 33(10): 881-91. [Abstract] [Full-text]
50. Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies.
    J Am Coll Cardiol, 48(8): 1610-7. [Abstract] [Full-text]
51. Approximate sample size calculations with microarray data: an illustration.
    Stat Appl Genet Mol Biol, 5(1): Article25. [Abstract] [Full-text]
52. Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma.
    BMC Genomics, 7: 252. [Abstract] [Full-text]
53. Microarray data on gene modulation by HIV-1 in immune cells: 2000-2006.
    J Leukoc Biol, 80(5): 1031-43. [Abstract] [Full-text]
54. Protein microarray platform for the multiplex analysis of biomarkers in human sera.
    J Immunol Methods, 316(1): 1-7. [Abstract] [Full-text]
55. Development and clinical evaluation of oligonucleotide microarray for HLA-AB genotyping.
    Pharmacogenomics, 7(7): 973-85. [Abstract] [Full-text]
56. A web-based system for tissue microarray data management.
    Diagn Pathol, 1: 36. [Abstract] [Full-text]
57. Microarray-based detection and typing of foot-and-mouth disease virus.
    Vet J, 172(3): 473-81. [Abstract] [Full-text]
58. Differential expression of insulin-like growth factor binding protein-5 in pancreatic adenocarcinomas: identification using DNA microarray.
    Mol Carcinog, 45(11): 814-27. [Abstract] [Full-text]
59. Patterns of gene expression in carp liver after exposure to a mixture of waterborne and dietary cadmium using a custom-made microarray.
    Aquat Toxicol, 80(2): 180-93. [Abstract] [Full-text]
60. Microarray-based comparative genomic hybridization analysis of Wolf-Hirschhorn syndrome in a fetus with deletion of 4p15.3 to 4pter.
    Birth Defects Res A Clin Mol Teratol, 76(10): 739-43. [Abstract] [Full-text]
61. Eigengene-based linear discriminant model for tumor classification using gene expression microarray data.
    Bioinformatics, 22(21): 2635-42. [Abstract] [Full-text]
62. ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data.
    Bioinformatics, 22(21): 2697-8. [Abstract] [Full-text]
63. Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data.
    BMC Bioinformatics, 7: 426. [Abstract] [Full-text]
64. Tissue MicroArray (TMA) analysis of normal and persistent Chlamydophila pneumoniae infection.
    BMC Infect Dis, 6: 152. [Abstract] [Full-text]
65. Integrative missing value estimation for microarray data.
    BMC Bioinformatics, 7: 449. [Abstract] [Full-text]
66. Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs.
    Plant Mol Biol, 62(4): 579-91. [Abstract] [Full-text]
67. Potential new antiepileptogenic targets indicated by microarray analysis in a rat model for temporal lobe epilepsy.
    J Neurosci, 26(43): 11083-110. [Abstract] [Full-text]
68. Identification of chromosomal alterations important in the development of cervical intraepithelial neoplasia and invasive carcinoma using alignment of DNA microarray data.
    Gynecol Oncol, 103(2): 458-62. [Abstract] [Full-text]
69. Differential expression profiling of genes in a complete hydatidiform mole using cDNA microarray analysis.
    Gynecol Oncol, 103(2): 654-60. [Abstract] [Full-text]
70. Design of microarray experiments for genetical genomics studies.
    Genetics, 174(2): 945-57. [Abstract] [Full-text]
71. Goulphar: rapid access and expertise for standard two-color microarray normalization methods.
    BMC Bioinformatics, 7: 467. [Abstract] [Full-text]
72. Novel microarray-based method for estimating exposure to ionizing radiation.
    Radiat Res, 166(5): 746-56. [Abstract] [Full-text]
73. Label-free reading of microarray-based proteins with high throughput surface plasmon resonance imaging.
    Biosens Bioelectron, 22(5): 644-8. [Abstract] [Full-text]
74. Genome-wide microRNA profiling in human fetal nervous tissues by oligonucleotide microarray.
    Childs Nerv Syst, 22(11): 1419-25. [Abstract] [Full-text]
75. Functional interpretation of microarray experiments.
    OMICS, 10(3): 398-410. [Abstract] [Full-text]
76. Comparative microarray analysis.
    OMICS, 10(3): 381-97. [Abstract] [Full-text]
77. Microarray analysis of alternative splicing.
    OMICS, 10(3): 344-57. [Abstract] [Full-text]
78. Microarray-based identification and RT-PCR test screening for epithelial-specific mRNAs in peripheral blood of patients with colon cancer.
    BMC Cancer, 6: 250. [Abstract] [Full-text]
79. Customized oligonucleotide microarray gene expression-based classification of neuroblastoma patients outperforms current clinical risk stratification.
    J Clin Oncol, 24(31): 5070-8. [Abstract] [Full-text]
80. Global analysis of hematopoietic and vascular endothelial gene expression by tissue specific microarray profiling in zebrafish.
    Dev Biol, 299(2): 551-62. [Abstract] [Full-text]

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