Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 3 (2006), Issue 12 (December)

1. Molecular signatures of soy-derived phytochemicals in androgen-responsive prostate cancer cells: a comparison study using DNA microarray.
   Mol Carcinog, 45(12): 943-56. [Abstract] [Full-text]
2. Microarray analysis of the developing cortex.
   J Neurobiol, 66(14): 1646-58. [Abstract] [Full-text]
3. Discovery of deregulation of zinc homeostasis and its associated genes in esophageal squamous cell carcinoma using cDNA microarray.
   Int J Cancer, 120(2): 230-42. [Abstract] [Full-text]
4. Kalman filtering for disease-state estimation from microarray data.
   Bioinformatics, 22(24): 3047-53. [Abstract] [Full-text]
5. A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1.
   Genome Res, 16(12): 1585-95. [Abstract] [Full-text]
6. Identification of differentially expressed microRNAs by microarray: a possible role for microRNA genes in pituitary adenomas.
   J Cell Physiol, 210(2): 370-7. [Abstract] [Full-text]
7. Prognostic value of cell cycle and apoptosis regulatory proteins in mismatch repair-proficient colorectal cancer: a tissue microarray-based approach.
   Am J Clin Pathol, 127(1): 114-23. [Abstract] [Full-text]
8. Characterization of ovine hepatic gene expression profiles in response to Escherichia coli lipopolysaccharide using a bovine cDNA microarray.
   BMC Vet Res, 2: 34. [Abstract] [Full-text]
9. Microarray analysis of the fetal hippocampus in the Emx2 mutant.
   Dev Neurosci, 29(1): 28-47. [Abstract] [Full-text]
10. The Shivplot: a graphical display for trend elucidation and exploratory analysis of microarray data.
    Source Code Biol Med, 1: 6. [Abstract] [Full-text]
11. Sample size planning for developing classifiers using high-dimensional DNA microarray data.
    Biostatistics, 8(1): 101-17. [Abstract] [Full-text]
12. Adjusting batch effects in microarray expression data using empirical Bayes methods.
    Biostatistics, 8(1): 118-27. [Abstract] [Full-text]
13. Automated quantitative analysis of DCC tumor suppressor protein in ovarian cancer tissue microarray shows association with {beta}-catenin levels and outcome in patients with epithelial ovarian cancer.
    Ann Oncol, 17(12): 1797-802. [Abstract] [Full-text]
14. Development of a serotype-specific DNA microarray for identification of some Shigella and pathogenic Escherichia coli strains.
    J Clin Microbiol, 44(12): 4376-83. [Abstract] [Full-text]
15. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
    BMC Bioinformatics, 7: 489. [Abstract] [Full-text]
16. A rapid method for microarray cross platform comparisons using gene expression signatures.
    Mol Cell Probes, 21(1): 35-46. [Abstract] [Full-text]
17. Molecular characterisation of Salmonella strains by an oligonucleotide multiprobe microarray.
    Mol Cell Probes, 21(1): 56-65. [Abstract] [Full-text]
18. Microarray analysis of gene expression in Men1 knockout embryoid body reveals genetic events involved in early mouse embryonic development.
    Biochem Biophys Res Commun, 352(2): 456-62. [Abstract] [Full-text]
19. Differential gene expression between flat adenoma and normal mucosa in the colon in a microarray analysis.
    J Gastroenterol, 41(11): 1053-63. [Abstract] [Full-text]
20. Micropatterning of cell-repellent polymer on a glass substrate for the highly resolved virus microarray.
    Langmuir, 22(26): 10889-92. [Abstract] [Full-text]
21. Analysis of gene expression identifies candidate molecular markers in nasopharyngeal carcinoma using microdissection and cDNA microarray.
    J Cancer Res Clin Oncol, 133(2): 71-81. [Abstract] [Full-text]
22. High throughput quantification of protein expression of cancer antigens in tissue microarray using quantum dot nanocrystals.
    Nano Lett, 6(12): 2881-6. [Abstract] [Full-text]
23. Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas.
    BMC Bioinformatics, 7: 526. [Abstract] [Full-text]
24. Microarray gene expression analysis in atrophying rainbow trout muscle: a unique nonmammalian muscle degradation model.
    Physiol Genomics, 28(1): 33-45. [Abstract] [Full-text]
25. A gene coexpression network for bovine skeletal muscle inferred from microarray data.
    Physiol Genomics, 28(1): 76-83. [Abstract] [Full-text]
26. Review of microarray experimental design strategies for genetical genomics studies.
    Physiol Genomics, 28(1): 15-23. [Abstract] [Full-text]
27. Data merging for integrated microarray and proteomic analysis.
    Brief Funct Genomic Proteomic, 5(4): 261-72. [Abstract] [Full-text]
28. The coccolithovirus microarray: an array of uses.
    Brief Funct Genomic Proteomic, 5(4): 273-9. [Abstract] [Full-text]
29. DNA-based diagnosis of malignant osteopetrosis by whole-genome scan using a single-nucleotide polymorphism microarray: standardization of molecular investigations of genetic diseases due to consanguinity.
    J Hum Genet, 52(1): 98-101. [Abstract] [Full-text]
30. Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation.
    Lab Invest, 87(1): 75-83. [Abstract] [Full-text]
31. DNA immobilisation procedures for surface plasmon resonance imaging (SPRI) based microarray systems.
    Biosens Bioelectron, 22(6): 803-9. [Abstract] [Full-text]
32. A molecular beacon DNA microarray system for rapid detection of E. coli O157:H7 that eliminates the risk of a false negative signal.
    Biosens Bioelectron, 22(6): 1041-7. [Abstract] [Full-text]
33. Dynamic variable selection in SNP genotype autocalling from APEX microarray data.
    BMC Bioinformatics, 7: 521. [Abstract] [Full-text]
34. Discrimination and scoring using small sets of genes for two-sample microarray data.
    Math Biosci, 205(2): 195-203. [Abstract] [Full-text]
35. Microarray analysis of gene expression in peripheral blood mononuclear cells from dioxin-exposed human subjects.
    Toxicology, 229(1): 101-13. [Abstract] [Full-text]
36. An agarose matrix facilitates sectioning of tissue microarray blocks.
    J Histochem Cytochem, 55(1): 21-4. [Abstract] [Full-text]
37. Use of microarray analysis to dissect the plant defense response.
    Methods Mol Biol, 354: 121-30. [Abstract] [Full-text]
38. Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.
    Bioinformatics, 23(1): 5-13. [Abstract] [Full-text]
39. Inferential, robust non-negative matrix factorization analysis of microarray data.
    Bioinformatics, 23(1): 44-9. [Abstract] [Full-text]
40. Estimating p-values in small microarray experiments.
    Bioinformatics, 23(1): 38-43. [Abstract] [Full-text]
41. Towards clustering of incomplete microarray data without the use of imputation.
    Bioinformatics, 23(1): 107-13. [Abstract] [Full-text]
42. cDNA microarray study to identify expression changes relevant for apoptosis in K562 cells co-treated with amifostine and imatinib.
    Cancer Chemother Pharmacol, 59(3): 349-60. [Abstract] [Full-text]
43. cDNA microarray analysis reveals fundamental differences in the expression profiles of primary human monocytes, monocyte-derived macrophages, and alveolar macrophages.
    J Leukoc Biol, 81(1): 328-35. [Abstract] [Full-text]
44. Microarray analysis reveals overexpression of CD163 and HO-1 in symptomatic carotid plaques.
    Arterioscler Thromb Vasc Biol, 27(1): 154-60. [Abstract] [Full-text]
45. Powers of multiple-testing procedures for identification of genes significantly differentially expressed in microarray experiments.
    Yi Chuan Xue Bao, 33(12): 1132-40. [Abstract] [Full-text]
46. The first fifty microarray studies in filamentous fungi.
    Microbiology, 153: 7-15. [Abstract] [Full-text]
47. Comparative analysis of a 3' end tag PCR and a linear RNA amplification approach for microarray analysis.
    J Biotechnol, 127(4): 638-46. [Abstract] [Full-text]
48. Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
    Phytochemistry, 68(1): 19-32. [Abstract] [Full-text]
49. Study of antimutagenic and antioxidant activities of gallic acid and 1,2,3,4,6-pentagalloylglucose from Pistacia lentiscus. Confirmation by microarray expression profiling.
    Chem Biol Interact, 165(1): 1-13. [Abstract] [Full-text]
50. A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens.
    Anal Biochem, 360(2): 244-54. [Abstract] [Full-text]
51. Multiplexing molecular diagnostics and immunoassays using emerging microarray technologies.
    Expert Rev Mol Diagn, 7(1): 87-98. [Abstract] [Full-text]
52. Individual differences of acupuncture analgesia in humans using cDNA microarray.
    J Physiol Sci, 56(6): 425-31. [Abstract] [Full-text]
53. Identification of A/H5N1 influenza viruses using a single gene diagnostic microarray.
    Anal Chem, 79(1): 378-84. [Abstract] [Full-text]

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