Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 3 (2006), Issue 5 (May)

1. Gene expression profiling in frataxin deficient mice: microarray evidence for significant expression changes without detectable neurodegeneration.
   Neurobiol Dis, 22(2): 302-11. [Abstract] [Full-text]
2. Effects of Scutellariae Radix on gene expression in HEK 293 cells using cDNA microarray.
   J Ethnopharmacol, 105(3): 346-51. [Abstract] [Full-text]
3. Differential expression of Epstein-Barr virus-encoded RNA and several tumor-related genes in various types of nasopharyngeal epithelial lesions and nasopharyngeal carcinoma using tissue microarray analysis.
   Hum Pathol, 37(5): 593-605. [Abstract] [Full-text]
4. Treating Expression Levels of Different Genes as a Sample in Microarray Data Analysis: Is it Worth a Risk?
   Stat Appl Genet Mol Biol, 5(1): Article9. [Abstract] [Full-text]
5. Quality optimised analysis of general paired microarray experiments.
   Stat Appl Genet Mol Biol, 5(1): Article10. [Abstract] [Full-text]
6. Effect of textile wastewaters on Saccharomyces cerevisiae using DNA microarray as a tool for genome-wide transcriptomics analysis.
   Water Res, 40(9): 1773-82. [Abstract] [Full-text]
7. Microarray expression profiling and functional characterization of AtTPS genes: Duplicated Arabidopsis thaliana sesquiterpene synthase genes At4g13280 and At4g13300 encode root-specific and wound-inducible (Z)-gamma-bisabolene synthases.
   Arch Biochem Biophys, 448(1): 104-16. [Abstract] [Full-text]
8. The effects of different sample labelling methods on signal intensities of a 60-mer diagnostic microarray.
   J Virol Methods, 134(1): 36-40. [Abstract] [Full-text]
9. Genomewide Oligonucleotide Microarray Analysis on Placentae of Pre-Eclamptic Pregnancies.
   Gynecol Obstet Invest, 62(2): 108-114. [Abstract] [Full-text]
10. Towards profiling the gene expression of fibroblasts from atopic dermatitis patients: human 8K complementary DNA microarray.
    Clin Exp Allergy, 36(5): 649-57. [Abstract] [Full-text]
11. Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation.
    BMC Bioinformatics, 7(1): 237. [Abstract] [Full-text]
12. Quantitative Proteomics of the Archaeon Methanococcus maripaludis Validated by Microarray Analysis and Real Time PCR.
    Mol Cell Proteomics, 5(5): 868-881. [Abstract] [Full-text]
13. Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data.
    BMC Bioinformatics, 7: 197. [Abstract] [Full-text]
14. Systematic immunohistochemical profiling of 378 brain tumors with 37 antibodies using tissue microarray technology.
    Acta Neuropathol (Berl), 111(5): 475-82. [Abstract] [Full-text]
15. Development and validation of an oligonucleotide microarray for detection of multiple virulence and antimicrobial resistance genes in Escherichia coli.
    Appl Environ Microbiol, 72(5): 3780-4. [Abstract] [Full-text]
16. Gene expression profile analysis in astaxanthin-induced Haematococcus pluvialis using a cDNA microarray.
    Planta, 223(6): 1231-42. [Abstract] [Full-text]
17. Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data.
    Bioinformatics, 22(10): 1259-68. [Abstract] [Full-text]
18. A calibration method for estimating absolute expression levels from microarray data.
    Bioinformatics, 22(10): 1251-8. [Abstract] [Full-text]
19. ProMAT: protein microarray analysis tool.
    Bioinformatics, 22(10): 1278-9. [Abstract] [Full-text]
20. A novel ensemble machine learning for robust microarray data classification.
    Comput Biol Med, 36(6): 553-73. [Abstract] [Full-text]
21. Comparison of gene expression profile between human chondrons and chondrocytes: a cDNA microarray study.
    Osteoarthritis Cartilage, 14(5): 449-59. [Abstract] [Full-text]
22. Genome-wide profiling of segmental-regulated transcriptomes in human epididymis using oligo microarray.
    Mol Cell Endocrinol, 250(1): 169-77. [Abstract] [Full-text]
23. Microarray-based survey of CpG islands identifies concurrent hyper- and hypomethylation patterns in tissues derived from patients with breast cancer.
    Genes Chromosomes Cancer, 45(7): 656-67. [Abstract] [Full-text]
24. Microarray detection of novel nuclear RNA substrates for the exosome.
    Yeast, 23(6): 439-54. [Abstract] [Full-text]
25. Differential RNA Expression Profile by cDNA Microarray in Sporadic Primary Hyperparathyroidism (pHPT): Primary Parathyroid Hyperplasia versus Adenoma.
    World J Surg, 30(5): 705-13. [Abstract] [Full-text]
26. Tissue microarray analysis of EGFR gene amplification and gain in Bulgarian patients with colorectal cancer.
    Onkologie, 29(5): 198-200. [Abstract] [Full-text]
27. Inferring transcriptional modules from ChIP-chip, motif and microarray data.
    Genome Biol, 7(5): R37. [Abstract] [Full-text]
28. Bayesian models for pooling microarray studies with multiple sources of replications.
    BMC Bioinformatics, 7(1): 247. [Abstract] [Full-text]
29. Comprehensive microarray analysis of Hoxa11/Hoxd11 mutant kidney development.
    Dev Biol, 293(2): 540-54. [Abstract] [Full-text]
30. Gene Expression Profiling Using cDNA Microarray Analysis of the Sexual Reproduction Stage of the Unicellular Charophycean Alga Closterium peracerosum-strigosum-littorale Complex.
    Plant Physiol, 141(1): 271-9. [Abstract] [Full-text]
31. Regularized binormal ROC method in disease classification using microarray data.
    BMC Bioinformatics, 7(1): 253. [Abstract] [Full-text]
32. Correction of scaling mismatches in oligonucleotide microarray data.
    BMC Bioinformatics, 7(1): 251. [Abstract] [Full-text]
33. MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.
    BMC Bioinformatics, 7: 190. [Abstract] [Full-text]
34. Microarray and real-time PCR analyses reveal mating type-dependent gene expression in a homothallic fungus.
    Mol Genet Genomics, 275(5): 492-503. [Abstract] [Full-text]
35. Analysis of gene-expression profiles by oligonucleotide microarray in children with influenza.
    J Gen Virol, 87: 1677-83. [Abstract] [Full-text]
36. Amplification of low quantity bacterial RNA for microarray studies: time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions.
    Environ Microbiol, 8(6): 1064-73. [Abstract] [Full-text]
37. Microarray analysis of Bacillus cereus group virulence factors.
    J Microbiol Methods, 65(3): 488-502. [Abstract] [Full-text]
38. Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR.
    J Microbiol Methods, 65(3): 453-67. [Abstract] [Full-text]
39. Rapid bacterial identification using evanescent-waveguide oligonucleotide microarray classification.
    J Microbiol Methods, 65(3): 390-403. [Abstract] [Full-text]
40. Using PCR amplification to increase the confidence level of Salmonella typhimurium DNA microarray chip hybridization.
    Mol Cell Probes, 20(3): 163-71. [Abstract] [Full-text]
41. Tissue array analysis of expression microarray candidates identifies markers associated with tumor grade and outcome in serous epithelial ovarian cancer.
    Int J Cancer, 119(3): 599-607. [Abstract] [Full-text]
42. Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.
    Anal Biochem, 353(1): 43-56. [Abstract] [Full-text]
43. Microarray Analysis of Gene Expression in the Supraoptic Nucleus of Normoosmotic and Hypoosmotic Rats.
    Cell Mol Neurobiol. [Abstract] [Full-text]
44. Chromosomal and genetic imbalances in synovial sarcoma detected by conventional and microarray comparative genomic hybridization.
    J Cancer Res Clin Oncol, 132(7): 444-50. [Abstract] [Full-text]
45. DNA microarray technology for target identification and validation.
    Clin Exp Pharmacol Physiol, 33(5): 496-503. [Abstract] [Full-text]
46. Microarray analysis of gene expression: considerations in data mining and statistical treatment.
    Physiol Genomics, 25(3): 355-63. [Abstract] [Full-text]
47. Cd14, Gbp1, and Pla2g2a: three major candidate genes for experimental IBD identified by combining QTL and microarray analyses.
    Physiol Genomics, 25(3): 426-34. [Abstract] [Full-text]
48. Microarray detection of a de novo der(X)t(X;11)(q28;p13) in a girl with premature ovarian failure and features of Beckwith-Wiedemann syndrome.
    J Hum Genet. [Abstract] [Full-text]
49. Combined application of behavior genetics and microarray analysis to identify regional expression themes and gene-behavior associations.
    J Neurosci, 26(20): 5277-87. [Abstract] [Full-text]
50. Microarray-assisted pathway analysis identifies mitogen-activated protein kinase signaling as a mediator of resistance to the green tea polyphenol epigallocatechin 3-gallate in her-2/neu-overexpressing breast cancer cells.
    Cancer Res, 66(10): 5322-9. [Abstract] [Full-text]
51. Progression-specific genes identified by expression profiling of matched ductal carcinomas in situ and invasive breast tumors, combining laser capture microdissection and oligonucleotide microarray analysis.
    Cancer Res, 66(10): 5278-86. [Abstract] [Full-text]
52. Immunohistochemical differential diagnosis between large cell neuroendocrine carcinoma and small cell carcinoma by tissue microarray analysis with a large antibody panel.
    Am J Clin Pathol, 125(5): 682-92. [Abstract] [Full-text]
53. DualChip microarray as a new tool in cancer research.
    Expert Rev Mol Diagn, 6(3): 295-306. [Abstract] [Full-text]
54. Microarray analysis identifies a set of CXCR3 and CCR2 ligand chemokines as early IFNB-responsive genes in peripheral blood lymphocytes: an implication for IFNB-related adverse effects in multiple sclerosis.
    BMC Neurol, 6(1): 18. [Abstract] [Full-text]
55. A dimensionless number analysis of the hybridization process in diffusion- and convection-driven DNA microarray systems.
    J Biotechnol, 123(4): 381-96. [Abstract] [Full-text]
56. CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data.
    BMC Genomics, 7: 91. [Abstract] [Full-text]
57. A new time-resolved fluorometric microarray detection system using core-shell-type fluorescent nanosphere and its application to allergen microarray.
    Anal Bioanal Chem. [Abstract] [Full-text]
58. Empirical array quality weights in the analysis of microarray data.
    BMC Bioinformatics, 7(1): 261. [Abstract] [Full-text]
59. Epidermal Growth Factor Receptor Expression in Pancreatic Carcinoma Using Tissue Microarray Technique.
    Dig Surg, 23(1): 74-79. [Abstract] [Full-text]
60. Development of a "reverse capture" autoantibody microarray for studies of antigen-autoantibody profiling.
    Proteomics, 6(10): 3199-209. [Abstract] [Full-text]
61. DNA microarray analysis of striatal gene expression in symptomatic transgenic Huntington's mice (R6/2) reveals neuroinflammation and insulin associations.
    Brain Res, 1088(1): 176-86. [Abstract] [Full-text]
62. Annotation of unknown yeast ORFs by correlation analysis of microarray data and extensive literature searches.
    Yeast, 23(7): 553-571. [Abstract] [Full-text]
63. A robust small-molecule microarray platform for screening cell lysates.
    Chem Biol, 13(5): 493-504. [Abstract] [Full-text]
64. Sex-dependent liver gene expression is extensive and largely dependent upon signal transducer and activator of transcription 5b (STAT5b): STAT5b-dependent activation of male genes and repression of female genes revealed by microarray analysis.
    Mol Endocrinol, 20(6): 1333-51. [Abstract] [Full-text]
65. The molecular portraits of breast tumors are conserved across microarray platforms.
    BMC Genomics, 7: 96. [Abstract] [Full-text]
66. Systematic comparison of the T7-IVT and SMART-based RNA preamplification techniques for DNA microarray experiments.
    Clin Chem, 52(6): 1161-7. [Abstract] [Full-text]
67. DNA microarray for detection of macrolide resistance genes.
    Antimicrob Agents Chemother, 50(6): 2038-41. [Abstract] [Full-text]
68. Monitoring the gene expression profiles of doxorubicin-resistant acute myelocytic leukemia cells by DNA microarray analysis.
    Life Sci, 79(2): 193-202. [Abstract] [Full-text]
69. Global gene expression of a murein (Braun) lipoprotein mutant of Salmonella enterica serovar Typhimurium by microarray analysis.
    Gene, 374: 121-7. [Abstract] [Full-text]
70. Rapid detection and species identification of Mycobacterium spp. using real-time PCR and DNA-microarray.
    J Microbiol Methods, 66(1): 116-24. [Abstract] [Full-text]
71. Microarray analysis of IFN-gamma response genes in astrocytes.
    J Neuroimmunol, 175(1): 19-30. [Abstract] [Full-text]
72. Prognostic significance of expression patterns of c-erbB-2, p53, p16INK4A, p27KIP1, cyclin D1 and epidermal growth factor receptor in oesophageal adenocarcinoma: a tissue microarray study.
    J Clin Pathol, 59(6): 631-4. [Abstract] [Full-text]

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