Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 3 (2006), Issue 7 (July)

1. Microarray technology offers a novel tool for the diagnosis and identification of therapeutic targets for male infertility.
   Reproduction, 132(1): 11-9. [Abstract] [Full-text]
2. DNA Microarray Reveals Novel Genes Induced by Mechanical Forces in Fetal Lung Type II Epithelial Cells.
   Pediatr Res. [Abstract] [Full-text]
3. The microarray data analysis process: from raw data to biological significance.
   NeuroRx, 3(3): 373-83. [Abstract] [Full-text]
4. Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification.
   Appl Environ Microbiol, 72(7): 4931-41. [Abstract] [Full-text]
5. A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities.
   Appl Environ Microbiol, 72(7): 4829-38. [Abstract] [Full-text]
6. Microarray evidence of glutaminyl cyclase gene expression in melanoma: Implications for tumor antigen specific immunotherapy.
   J Transl Med, 4(1): 27. [Abstract] [Full-text]
7. A methodology for global validation of microarray experiments.
   BMC Bioinformatics, 7(1): 333. [Abstract] [Full-text]
8. A transforming MET mutation discovered in non-small cell lung cancer using microarray-based resequencing.
   Cancer Lett, 239(2): 227-33. [Abstract] [Full-text]
9. A system-based approach to interpret dose- and time-dependent microarray data: quantitative integration of gene ontology analysis for risk assessment.
   Toxicol Sci, 92(2): 560-77. [Abstract] [Full-text]
10. Microarray analysis reveals differential gene expression patterns in tumors of the pineal region.
    J Neuropathol Exp Neurol, 65(7): 675-84. [Abstract] [Full-text]
11. Identification and characterization of bacterial pathogens causing bloodstream infections by DNA microarray.
    J Clin Microbiol, 44(7): 2389-97. [Abstract] [Full-text]
12. Evaluation of the TB-Biochip oligonucleotide microarray system for rapid detection of rifampin resistance in Mycobacterium tuberculosis.
    J Clin Microbiol, 44(7): 2378-81. [Abstract] [Full-text]
13. AMDA: an R package for the automated microarray data analysis.
    BMC Bioinformatics, 7(1): 335. [Abstract] [Full-text]
14. Gene expression in acute Stanford type A dissection: a comparative microarray study.
    J Transl Med, 4(1): 29. [Abstract] [Full-text]
15. Microarray RNA transcriptional profiling: part I. Platforms, experimental design and standardization.
    Expert Rev Mol Diagn, 6(4): 535-50. [Abstract] [Full-text]
16. Novel drug discovery and molecular biological methods, via DNA, RNA and protein changes using structure-function transitions: Transitional structural chemogenomics, transitional structural chemoproteomics and novel multi-stranded nucleic acid microarray.
    Med Hypotheses. [Abstract] [Full-text]
17. DNA microarray technology: a new tool for the epidemiological typing of bacterial pathogens?
    FEMS Immunol Med Microbiol, 47(2): 178-89. [Abstract] [Full-text]
18. Foxp3-dependent and -independent molecules specific for CD25+CD4+ natural regulatory T cells revealed by DNA microarray analysis.
    Int Immunol, 18(8): 1197-209. [Abstract] [Full-text]
19. The Potential Allergenicity of Two 2S Albumins from Soybean (Glycine max): A Protein Microarray Approach.
    Int Arch Allergy Immunol, 141(2): 91-102. [Abstract] [Full-text]
20. Quantitative trait associated microarray gene expression data analysis.
    Mol Biol Evol, 23(8): 1558-73. [Abstract] [Full-text]
21. Novel function of ovarian growth factors: combined studies by DNA microarray, biochemical and physiological approaches.
    Mol Hum Reprod, 12(7): 413-9. [Abstract] [Full-text]
22. JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information.
    Nucleic Acids Res, 34: W510-5. [Abstract] [Full-text]
23. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res, 34: W504-9. [Abstract] [Full-text]
24. CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.
    Nucleic Acids Res, 34: W498-503. [Abstract] [Full-text]
25. Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, 34: W486-91. [Abstract] [Full-text]
26. Individualized markers optimize class prediction of microarray data.
    BMC Bioinformatics, 7(1): 345. [Abstract] [Full-text]
27. A robust statistical procedure to discover expression biomarkers using microarray genomic expression data.
    J Zhejiang Univ Sci B, 7(8): 603-7. [Abstract] [Full-text]
28. Microarray-based characterisation of a Panton-Valentine leukocidin-positive community-acquired strain of methicillin-resistant Staphylococcus aureus.
    Clin Microbiol Infect, 12(8): 718-28. [Abstract] [Full-text]
29. Microarray-based molecular margin methylation pattern analysis in colorectal carcinoma.
    Anal Biochem, 355(1): 117-24. [Abstract] [Full-text]
30. Knowledge guided analysis of microarray data.
    J Biomed Inform, 39(4): 401-11. [Abstract] [Full-text]
31. The effect of GeneChip gene definitions on the microarray study of cancers.
    Bioessays, 28(7): 739-746. [Abstract] [Full-text]
32. Identification of prognostic signatures in breast cancer microarray data using Bayesian techniques.
    J R Soc Interface, 3(8): 367-81. [Abstract] [Full-text]
33. Simulation of microarray data with realistic characteristics.
    BMC Bioinformatics, 7(1): 349. [Abstract] [Full-text]
34. Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray.
    Mamm Genome, 17(7): 777-89. [Abstract] [Full-text]
35. A microarray analysis of the murine macrophage response to infection with Francisella tularensis LVS.
    J Med Microbiol, 55: 1023-33. [Abstract] [Full-text]
36. High throughput tissue microarray analysis of FHIT expression in diffuse large cell B-cell lymphoma from Saudi Arabia.
    Mod Pathol, 19(8): 1124-9. [Abstract] [Full-text]
37. Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
    BMC Bioinformatics, 7: 307. [Abstract] [Full-text]
38. Kernel-based distance metric learning for microarray data classification.
    BMC Bioinformatics, 7: 299. [Abstract] [Full-text]
39. Consensus guidelines for microarray gene expression analyses in leukemia from three European leukemia networks.
    Leukemia, 20(8): 1385-92. [Abstract] [Full-text]
40. An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes.
    Nucleic Acids Res, 34(12): e87. [Abstract] [Full-text]
41. Sequencing of the intergenic 16S-23S rRNA spacer (ITS) region of Mollicutes species and their identification using microarray-based assay and DNA sequencing.
    Appl Microbiol Biotechnol, 71(5): 680-98. [Abstract] [Full-text]
42. DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure.
    J Ind Microbiol Biotechnol, 33(9): 784-90. [Abstract] [Full-text]
43. Isolation of erythroid cells from the mouse embryonic yolk sac by laser capture microdissection and subsequent microarray hybridization.
    Blood Cells Mol Dis, 37(1): 27-32. [Abstract] [Full-text]
44. Statistical validation of two sample comparison methods for oligonucleotide microarray in rat ischemia model.
    Neurochem Res, 31(6): 735-40. [Abstract] [Full-text]
45. Antibody microarray-based oncoproteomics.
    Expert Opin Biol Ther, 6(8): 833-8. [Abstract] [Full-text]
46. A multiplex DNA suspension microarray for simultaneous detection and differentiation of classical swine fever virus and other pestiviruses.
    J Virol Methods, 136(1): 17-23. [Abstract] [Full-text]
47. New mosaic subgenotype of varicella-zoster virus in the USA: VZV detection and genotyping by oligonucleotide-microarray.
    J Virol Methods, 136(1): 8-16. [Abstract] [Full-text]
48. Applicability of microarray technique for the detection of noro- and astroviruses.
    J Virol Methods, 136(1): 210-6. [Abstract] [Full-text]
49. Targeted genomic microarray analysis for identification of chromosome abnormalities in 1500 consecutive clinical cases.
    J Pediatr, 149(1): 98-102. [Abstract] [Full-text]
50. Gene expression in blood changes rapidly in neutrophils and monocytes after ischemic stroke in humans: a microarray study.
    J Cereb Blood Flow Metab, 26(8): 1089-102. [Abstract] [Full-text]
51. Microarray expression profiles of angiogenesis-related genes predict tumor cell response to artemisinins.
    Pharmacogenomics J, 6(4): 269-78. [Abstract] [Full-text]
52. Micromolding of photocrosslinkable chitosan hydrogel for spheroid microarray and co-cultures.
    Biomaterials, 27(30): 5259-67. [Abstract] [Full-text]
53. Genomic comparison of Yersinia pestis and Yersinia pseudotuberculosis by combination of suppression subtractive hybridization and DNA microarray.
    Arch Microbiol, 186(2): 151-9. [Abstract] [Full-text]
54. DNA microarray reveals novel genes induced by mechanical forces in fetal lung type II epithelial cells.
    Pediatr Res, 60(2): 118-24. [Abstract] [Full-text]
55. Differences in the expression of genes between normal tissue and squamous cell carcinomas of head and neck using cancer-related gene cDNA microarray.
    Acta Otolaryngol, 126(9): 967-74. [Abstract] [Full-text]
56. Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens.
    Proc Natl Acad Sci U S A, 103(30): 11234-9. [Abstract] [Full-text]
57. Role of the mitogen-activated protein kinase and phosphoinositide 3-kinase/AKT pathways downstream molecules, phosphorylated extracellular signal-regulated kinase, and phosphorylated AKT in colorectal cancer-a tissue microarray-based approach.
    Hum Pathol, 37(8): 1022-31. [Abstract] [Full-text]
58. Oligonucleotide microarray analysis of strain- and gender-associated gene expression in the human blood fluke, Schistosoma japonicum.
    Mol Cell Probes, 20(5): 280-9. [Abstract] [Full-text]
59. How accurately can we control the FDR in analyzing microarray data?
    Bioinformatics, 22(14): 1730-6. [Abstract] [Full-text]
60. Identification of humoral immune responses in protein microarrays using DNA microarray data analysis techniques.
    Bioinformatics, 22(14): 1760-6. [Abstract] [Full-text]
61. Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.
    Bioinformatics, 22(14): 1737-44. [Abstract] [Full-text]
62. Microarray analysis of blood microvessels from PDGF-B and PDGF-Rbeta mutant mice identifies novel markers for brain pericytes.
    FASEB J, 20(10): 1703-5. [Abstract] [Full-text]
63. springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an 'information landscape'.
    Bioinformatics, 22(14): e99-e107. [Abstract] [Full-text]
64. Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.
    Bioinformatics, 22(14): e184-90. [Abstract] [Full-text]
65. Effects of U0126 and fibroblast growth factor on gene expression profile in Ciona intestinalis embryos as revealed by microarray analysis.
    Dev Growth Differ, 48(6): 391-400. [Abstract] [Full-text]
66. The application of microarray analysis to pediatric diseases.
    Pediatr Clin North Am, 53(4): 579-90. [Abstract] [Full-text]
67. Comparison of commercial probe labeling kits for microarray: towards quality assurance and consistency of reactions.
    Anal Biochem, 355(2): 224-31. [Abstract] [Full-text]
68. Microarray data analysis made easy.
    Trends Plant Sci, 11(7): 322-3. [Abstract] [Full-text]
69. Microarray analysis of variation in individual aging C. elegans: Approaches and challenges.
    Exp Gerontol. [Abstract] [Full-text]

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