Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 3 (2006), Issue 9 (September)

1. Expression of cyclooxygenase-2 in Wilms tumor: immunohistochemical study using tissue microarray methodology.
   J Urol, 176(4): 1747-50. [Abstract] [Full-text]
2. Exploring the molecular basis of tumor metastasis by microarray analysis.
   Assay Drug Dev Technol, 4(4): 483-8. [Abstract] [Full-text]
3. Electrochemical detection of single-nucleotide mismatches using an electrode microarray.
   Anal Chem, 78(17): 6096-101. [Abstract] [Full-text]
4. Cross-validated Cox regression on microarray gene expression data.
   Stat Med, 25(18): 3201-16. [Abstract] [Full-text]
5. A Bayesian determination of threshold for identifying differentially expressed genes in microarray experiments.
   Stat Med, 25(18): 3174-89. [Abstract] [Full-text]
6. Topology-based cancer classification and related pathway mining using microarray data.
   Nucleic Acids Res, 34(14): 4069-80. [Abstract] [Full-text]
7. Simultaneous multigene mutation detection in patients with sensorineural hearing loss through a novel diagnostic microarray: a new approach for newborn screening follow-up.
   Pediatrics, 118(3): 985-94. [Abstract] [Full-text]
8. Phospho-Stat3 expression and correlation with VEGF, p53, and Bcl-2 in gastric carcinoma using tissue microarray.
   APMIS, 114(9): 619-25. [Abstract] [Full-text]
9. Survey of microarray technologies suitable to elucidate transcriptional networks as exemplified by studying KRAB zinc finger gene families.
   Proteomics, 6(17): 4704-15. [Abstract] [Full-text]
10. Genomic alterations in lobular neoplasia: a microarray comparative genomic hybridization signature for early neoplastic proliferationin the breast.
    Genes Chromosomes Cancer, 45(11): 1007-17. [Abstract] [Full-text]
11. Routine assessment of prognostic factors in breast cancer using a multicore tissue microarray procedure.
    Virchows Arch, 449(3): 288-96. [Abstract] [Full-text]
12. Assessment of epidermal growth factor receptor (EGFR) expression in primary colorectal carcinomas and their related metastases on tissue sections and tissue microarray.
    Virchows Arch, 449(3): 281-287. [Abstract] [Full-text]
13. Analysis of promoter regions of co-expressed genes identified by microarray analysis.
    BMC Bioinformatics, 7: 384. [Abstract] [Full-text]
14. Detection of elafin as a candidate biomarker for ulcerative colitis by whole-genome microarray screening.
    Inflamm Bowel Dis, 12(9): 837-42. [Abstract] [Full-text]
15. High-throughput identification of clinical pathogenic fungi by hybridization to an oligonucleotide microarray.
    J Clin Microbiol, 44(9): 3299-305. [Abstract] [Full-text]
16. Microarray comparative genomic hybridization reveals genome-wide patterns of DNA gains and losses in post-Chernobyl thyroid cancer.
    Radiat Res, 166(3): 519-31. [Abstract] [Full-text]
17. Bayesian variable selection for the analysis of microarray data with censored outcomes.
    Bioinformatics, 22(18): 2262-8. [Abstract] [Full-text]
18. arrayQCplot: software for checking the quality of microarray data.
    Bioinformatics, 22(18): 2305-7. [Abstract] [Full-text]
19. Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation.
    Appl Environ Microbiol, 72(9): 6288-98. [Abstract] [Full-text]
20. Fiber-optic microarray for simultaneous detection of multiple harmful algal bloom species.
    Appl Environ Microbiol, 72(9): 5742-9. [Abstract] [Full-text]
21. Microarray expression profiling of Yersinia pestis in response to chloramphenicol.
    FEMS Microbiol Lett, 263(1): 26-31. [Abstract] [Full-text]
22. Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.
    Environ Microbiol, 8(10): 1805-15. [Abstract] [Full-text]
23. Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats.
    Environ Microbiol, 8(10): 1721-35. [Abstract] [Full-text]
24. Microarray analysis on Runx2-deficient mouse embryos reveals novel Runx2 functions and target genes during intramembranous and endochondral bone formation.
    Bone, 39(4): 724-38. [Abstract] [Full-text]
25. Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project.
    Nat Biotechnol, 24(9): 1140-50. [Abstract] [Full-text]
26. Evaluation of external RNA controls for the assessment of microarray performance.
    Nat Biotechnol, 24(9): 1132-9. [Abstract] [Full-text]
27. Using RNA sample titrations to assess microarray platform performance and normalization techniques.
    Nat Biotechnol, 24(9): 1123-31. [Abstract] [Full-text]
28. Evaluation of DNA microarray results with quantitative gene expression platforms.
    Nat Biotechnol, 24(9): 1115-22. [Abstract] [Full-text]
29. Optimal design of microarray immunoassays to compensate for kinetic limitations: theory and experiment.
    Mol Cell Proteomics, 5(9): 1681-96. [Abstract] [Full-text]
30. On the statistical assessment of classifiers using DNA microarray data.
    BMC Bioinformatics, 7: 387. [Abstract] [Full-text]
31. Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data.
    Proc Natl Acad Sci U S A, 103(37): 13629-34. [Abstract] [Full-text]
32. Differential identification of Bacillus anthracis from environmental Bacillus species using microarray analysis.
    J Appl Microbiol, 101(4): 754-63. [Abstract] [Full-text]
33. Expression profiling of endocrine-disrupting compounds using a customized Cyprinus carpio cDNA microarray.
    Toxicol Sci, 93(2): 298-310. [Abstract] [Full-text]
34. Antibody microarray detection of Escherichia coli O157:H7: Quantification, assay limitations, and capture efficiency.
    Anal Chem, 78(18): 6601-7. [Abstract] [Full-text]
35. Automated target preparation for microarray-based gene expression analysis.
    Anal Chem, 78(18): 6299-305. [Abstract] [Full-text]
36. Identifying target genes of the aryl hydrocarbon receptor nuclear translocator (Arnt) using DNA microarray analysis.
    Biol Chem, 387(9): 1215-8. [Abstract] [Full-text]
37. cDNA microarray analysis of differential gene expression and regulation in clinically drug-resistant isolates of Candida albicans from bone marrow transplanted patients.
    Int J Med Microbiol, 296(6): 421-34. [Abstract] [Full-text]
38. Numerical analysis of DNA microarray data of Campylobacter jejuni strains correlated with survival, cytolethal distending toxin and haemolysin analyses.
    Int J Med Microbiol, 296(6): 353-63. [Abstract] [Full-text]
39. Microarray analysis of uterine epithelial gene expression during the implantation window in the mouse.
    Endocrinology, 147(10): 4904-16. [Abstract] [Full-text]
40. Microarray identifies ADAM family members as key responders to TGF-beta1 in alveolar epithelial cells.
    Respir Res, 7: 114. [Abstract] [Full-text]
41. Microarray profiling of skeletal muscle sarcoplasmic reticulum proteins.
    Biochim Biophys Acta, 1764(9): 1429-35. [Abstract] [Full-text]
42. Increasing EMMPRIN and matriptase expression in hepatocellular carcinoma: tissue microarray analysis of immunohistochemical scores with clinicopathological parameters.
    Histopathology, 49(4): 388-95. [Abstract] [Full-text]
43. Surface manipulation of biomolecules for cell microarray applications.
    Trends Biotechnol, 24(10): 471-7. [Abstract] [Full-text]
44. Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult.
    Clin Infect Dis, 43(8): e71-6. [Abstract] [Full-text]
45. Prevalence of fragile histidine triad expression in tumors from saudi arabia: a tissue microarray analysis.
    Cancer Epidemiol Biomarkers Prev, 15(9): 1708-18. [Abstract] [Full-text]
46. Quantitative assessment of RUNX3 methylation in neoplastic and non-neoplastic gastric epithelia using a DNA microarray.
    Pathol Int, 56(10): 571-5. [Abstract] [Full-text]
47. Microarray analysis reveals distinct gene expression patterns in the mouse cortex following chronic neuroleptic and stimulant treatment: implications for body weight changes.
    J Neural Transm, 113(10): 1383-93. [Abstract] [Full-text]
48. Tissue microarray profiling of primary and xenotransplanted synovial sarcomas demonstrates the immunophenotypic similarities existing between SYT-SSX fusion gene confirmed, biphasic, and monophasic fibrous variants.
    Virchows Arch, 449(4): 435-47. [Abstract] [Full-text]
49. Identification of candidate maternal-effect genes through comparison of multiple microarray data sets.
    Mamm Genome, 17(9): 941-9. [Abstract] [Full-text]
50. Angiogenic profile of soft tissue sarcomas based on analysis of circulating factors and microarray gene expression.
    J Surg Res, 135(2): 282-90. [Abstract] [Full-text]
51. Model-based identification of cis-acting elements from microarray data.
    Genomics, 88(4): 452-61. [Abstract] [Full-text]
52. Recent developments in microarray-based enzyme assays: from functional annotation to substrate/inhibitor fingerprinting.
    Anal Bioanal Chem, 386(3): 416-26. [Abstract] [Full-text]
53. Identification of genes regulated by Wnt/beta-catenin pathway and involved in apoptosis via microarray analysis.
    BMC Cancer, 6: 221. [Abstract] [Full-text]
54. Development of a human mitochondria-focused cDNA microarray (hMitChip) and validation in skeletal muscle cells: implications for pharmaco- and mitogenomics.
    Pharmacogenomics J, 6(5): 333-42. [Abstract] [Full-text]
55. Comparison of different approaches for comparative genetic analysis using microarray hybridization.
    Appl Microbiol Biotechnol, 72(4): 852-9. [Abstract] [Full-text]
56. CpG-mediated changes in gene expression in murine spleen cells identified by microarray analysis.
    Mol Immunol, 44(6): 1095-104. [Abstract] [Full-text]
57. Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform.
    Nucleic Acids Res. [Abstract] [Full-text]
58. Characterization of differential gene expression profiles in diabetic embryopathy using DNA microarray analysis.
    Am J Obstet Gynecol, 195(4): 1075-80. [Abstract] [Full-text]
59. A Laplace mixture model for identification of differential expression in microarray experiments.
    Biostatistics, 7(4): 630-41. [Abstract] [Full-text]
60. Grainyhead-like 3, a transcription factor identified in a microarray screen, promotes the specification of the superficial layer of the embryonic epidermis.
    Mech Dev, 123(9): 702-18. [Abstract] [Full-text]
61. Identification of critical genes in microarray experiments by a Neuro-Fuzzy approach.
    Comput Biol Chem, 30(5): 372-81. [Abstract] [Full-text]
62. On the identification of differentially expressed genes: Improving the generalized F-statistics for Affymetrix microarray gene expression data.
    Comput Biol Chem, 30(5): 321-6. [Abstract] [Full-text]
63. Differential microarray analysis of Drosophila mushroom body transcripts using chemical ablation.
    Proc Natl Acad Sci U S A, 103(39): 14417-22. [Abstract] [Full-text]
64. Dual colour, microarray-based, analysis of 10,000 protease substrates.
    Chem Commun (Camb). [Abstract] [Full-text]
65. Minimum compliance for a microarray experiment?
    Nat Genet, 38(10): 1089. [Abstract] [Full-text]
66. Microarray analysis indicates an important role for FABP5 and putative novel FABPs on a Western-type diet.
    J Lipid Res, 47(10): 2198-207. [Abstract] [Full-text]

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