Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 4 (2007), Issue 1 (January)

1. PathoPlant: a platform for microarray expression data to analyze co-regulated genes involved in plant defense responses.
   Nucleic Acids Res, 35: D841-5. [Abstract] [Full-text]
2. Gene Aging Nexus: a web database and data mining platform for microarray data on aging.
   Nucleic Acids Res, 35: D756-9. [Abstract] [Full-text]
3. ArrayExpress--a public database of microarray experiments and gene expression profiles.
   Nucleic Acids Res, 35: D747-50. [Abstract] [Full-text]
4. The Stanford Microarray Database: implementation of new analysis tools and open source release of software.
   Nucleic Acids Res, 35: D766-70. [Abstract] [Full-text]
5. Microarray-based analysis of ventilator-induced lung injury.
   Proc Am Thorac Soc, 4(1): 77-84. [Abstract] [Full-text]
6. Novel insights into lung transplant rejection by microarray analysis.
   Proc Am Thorac Soc, 4(1): 44-51. [Abstract] [Full-text]
7. Microarray analysis of Fusarium graminearum-induced wheat genes: identification of organ-specific and differentially expressed genes.
   Plant Biotechnol J, 5(1): 38-49. [Abstract] [Full-text]
8. Credentialing preclinical pediatric xenograft models using gene expression and tissue microarray analysis.
   Cancer Res, 67(1): 32-40. [Abstract] [Full-text]
9. Is triple immunostaining with 34betaE12, p63, and racemase in prostate cancer advantageous? A tissue microarray study.
   Am J Clin Pathol, 127(2): 248-53. [Abstract] [Full-text]
10. Construction and validation of a bone marrow tissue microarray.
    J Clin Pathol, 60(1): 57-61. [Abstract] [Full-text]
11. SIGMA: a system for integrative genomic microarray analysis of cancer genomes.
    BMC Genomics, 7: 324. [Abstract] [Full-text]
12. Genetic Stock Identification of Chum Salmon in the Bering Sea and North Pacific Ocean Using Mitochondrial DNA Microarray.
    Mar Biotechnol (NY). [Abstract] [Full-text]
13. Statistically designing microarrays and microarray experiments to enhance sensitivity and specificity.
    Brief Bioinform, 8(1): 22-31. [Abstract] [Full-text]
14. Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation.
    Extremophiles, 11(1): 19-29. [Abstract] [Full-text]
15. Microarray-based analysis of microbial community RNAs by whole-community RNA amplification.
    Appl Environ Microbiol, 73(2): 563-71. [Abstract] [Full-text]
16. Optical study of DNA surface hybridization reveals DNA surface density as a key parameter for microarray hybridization kinetics.
    Biophys J, 92(3): 999-1004. [Abstract] [Full-text]
17. A novel antibody microarray format using non-covalent antibody immobilization with chemiluminescent detection.
    Mol Biosyst, 3(1): 36-42. [Abstract] [Full-text]
18. A nifH-based Oligonucleotide Microarray for Functional Diagnostics of Nitrogen-fixing Microorganisms.
    Microb Ecol. [Abstract] [Full-text]
19. Tissue microarray analysis reveals a tight correlation between protein expression pattern and progression of esophageal squamous cell carcinoma.
    BMC Cancer, 6: 296. [Abstract] [Full-text]
20. Identification of genes related to mechanical stress in human periodontal ligament cells using microarray analysis.
    J Periodontal Res, 42(1): 15-22. [Abstract] [Full-text]
21. Development of a DNA microarray to identify the Streptococcus pneumoniae serotypes contained in the 23-valent pneumococcal polysaccharide vaccine and closely related serotypes.
    J Microbiol Methods, 68(1): 128-136. [Abstract] [Full-text]
22. Characterization of mRNA species that are associated with postsynaptic density fraction by gene chip microarray analysis.
    Neurosci Res, 57(1): 61-85. [Abstract] [Full-text]
23. Protein microarray technology.
    Mech Ageing Dev, 128(1): 161-7. [Abstract] [Full-text]
24. Regulatory networks: Linking microarray data to systems biology.
    Mech Ageing Dev, 128(1): 168-72. [Abstract] [Full-text]
25. Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae.
    Nucleic Acids Res, 35(1): 279-87. [Abstract] [Full-text]
26. Detection of transcriptional difference of porcine imprinted genes using different microarray platforms.
    BMC Genomics, 7: 328. [Abstract] [Full-text]
27. Microarray-based kinase inhibition assay by gold nanoparticle probes.
    Anal Chem, 79(2): 773-7. [Abstract] [Full-text]
28. Microarray analysis of gene expression profile in the corpus cavernosum of hypercholesterolemic rats after chronic treatment with PDE5 inhibitor.
    Life Sci, 80(7): 699-708. [Abstract] [Full-text]
29. DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus.
    Mol Cell Probes, 21(2): 152-60. [Abstract] [Full-text]
30. An annotated cDNA library and microarray for large-scale gene-expression studies in the ant Solenopsis invicta.
    Genome Biol, 8(1): R9. [Abstract] [Full-text]
31. Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment.
    Mol Cell Probes, 21(2): 134-9. [Abstract] [Full-text]
32. Cutaneous gene expression by DNA microarray in murine sclerodermatous graft-versus-host disease, a model for human scleroderma.
    J Invest Dermatol, 127(2): 281-92. [Abstract] [Full-text]
33. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting.
    J Natl Cancer Inst, 99(2): 147-57. [Abstract] [Full-text]
34. Microarray analysis of zygotic expression of transcription factor genes and cell signaling molecule genes in early Ciona intestinalis embryos.
    Dev Growth Differ, 49(1): 27-37. [Abstract] [Full-text]
35. Detection of small genomic imbalances using microarray-based multiplex amplifiable probe hybridization.
    Eur J Hum Genet, 15(2): 162-72. [Abstract] [Full-text]
36. Systematic interpretation of microarray data using experiment annotations.
    BMC Genomics, 7: 319. [Abstract] [Full-text]
37. Comparison of p16(INK4a) expression with p53 alterations in head and neck cancer by tissue microarray analysis.
    J Pathol, 211(3): 314-22. [Abstract] [Full-text]
38. Microarray interrogation of human metanephric mesenchymal cells highlights potentially important molecules in vivo.
    Physiol Genomics, 28(2): 193-202. [Abstract] [Full-text]
39. Microarray analyses of meningococcal genome composition and gene regulation: a review of the recent literature.
    FEMS Microbiol Rev, 31(1): 43-51. [Abstract] [Full-text]
40. A novel plasmid-based microarray screen identifies suppressors of rrp6Delta in Saccharomyces cerevisiae.
    Mol Cell Biol, 27(3): 1044-55. [Abstract] [Full-text]
41. FLAME, a novel fuzzy clustering method for the analysis of DNA microarray data.
    BMC Bioinformatics, 8: 3. [Abstract] [Full-text]
42. Microarray analysis reveals the role of matrix metalloproteinases in mouse experimental autoimmune myocarditis induced by cardiac myosin peptides.
    Cell Mol Biol Lett. [Abstract] [Full-text]
43. Gene-specific fluorescence in-situ hybridization analysis on tissue microarray to refine the region of chromosome 20q amplification in melanoma.
    Melanoma Res, 17(1): 37-41. [Abstract] [Full-text]
44. Dissecting functional roles of p53 N-terminal transactivation domains by microarray expression analysis.
    Cancer Sci, 98(2): 189-200. [Abstract] [Full-text]
45. Microarray-based analysis of changes in diversity of microbial genes involved in organic carbon decomposition following land use/cover changes.
    FEMS Microbiol Lett, 266(2): 144-51. [Abstract] [Full-text]
46. AGScan: a pluggable microarray image quantification software based on the ImageJ library.
    Bioinformatics, 23(2): 247-8. [Abstract] [Full-text]
47. Effects of melatonin and age on gene expression in mouse CNS using microarray analysis.
    Neurochem Int, 50(2): 336-44. [Abstract] [Full-text]
48. Interpretation of ANOVA models for microarray data using PCA.
    Bioinformatics, 23(2): 184-90. [Abstract] [Full-text]
49. A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization.
    J Mol Evol, 64(2): 272-83. [Abstract] [Full-text]
50. Merging microarray cell synchronization experiments through curve alignment.
    Bioinformatics, 23(2): e64-70. [Abstract] [Full-text]
51. Microarray-based comparative genomic hybridisation of breast cancer patients receiving neoadjuvant chemotherapy.
    Br J Cancer, 96(2): 341-51. [Abstract] [Full-text]
52. A dolphin peripheral blood leukocyte cDNA microarray for studies of immune function and stress reactions.
    Dev Comp Immunol, 31(5): 520-9. [Abstract] [Full-text]
53. A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies.
    Plant J, 49(3): 565-77. [Abstract] [Full-text]
54. Meta-analysis for microarray studies of the genetics of complex traits.
    Trends Biotechnol, 25(2): 45-7. [Abstract] [Full-text]
55. A cancer protein microarray platform using antibody fragments and its clinical applications.
    Mol Biosyst, 3(2): 151-8. [Abstract] [Full-text]
56. A trap-and-release integrated microfluidic system for dynamic microarray applications.
    Proc Natl Acad Sci U S A, 104(4): 1146-51. [Abstract] [Full-text]
57. Microarray analysis reveals altered expression of a large number of nuclear genes in developing cytoplasmic male sterile Brassica napus flowers.
    Plant J, 49(3): 452-62. [Abstract] [Full-text]
58. Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.
    BMC Bioinformatics, 7: 538. [Abstract] [Full-text]
59. Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue.
    J Mol Diagn, 9(1): 70-9. [Abstract] [Full-text]
60. Development and applications of a BRAF oligonucleotide microarray.
    J Mol Diagn, 9(1): 55-63. [Abstract] [Full-text]
61. Microarray-based identification of tenascin C and tenascin XB, genes possibly involved in tumorigenesis associated with neurofibromatosis type 1.
    Clin Cancer Res, 13(2): 398-407. [Abstract] [Full-text]
62. Gene expression signature and the prediction of ulcerative colitis-associated colorectal cancer by DNA microarray.
    Clin Cancer Res, 13(2): 415-20. [Abstract] [Full-text]
63. Direct electrochemical addressing of immunoglobulins: immuno-chip on screen-printed microarray.
    Biosens Bioelectron, 22(7): 1522-6. [Abstract] [Full-text]
64. Sensitivity enhancement of DNA microarray on nano-scale controlled surface by using a streptavidin-fluorophore conjugate.
    Biosens Bioelectron, 22(7): 1532-7. [Abstract] [Full-text]
65. Transcriptional profiling of hematologic malignancies with a low-density DNA microarray.
    Clin Chem, 53(2): 259-67. [Abstract] [Full-text]
66. Microarray-in-a-tube for detection of multiple viruses.
    Clin Chem, 53(2): 188-94. [Abstract] [Full-text]
67. Controlling microarray spot morphology with polymer liftoff arrays.
    Anal Chem, 79(3): 1109-14. [Abstract] [Full-text]
68. Detection of multiple proteins on one spot by laser ablation inductively coupled plasma mass spectrometry and application to immuno- microarray with element-tagged antibodies.
    Anal Chem, 79(3): 923-9. [Abstract] [Full-text]
69. Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.
    BMC Bioinformatics, 8: 14. [Abstract] [Full-text]

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