Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 4 (2007), Issue 10 (October)

1. Microarray based study on virulence-associated genes and resistance determinants of Staphylococcus aureus isolates from cattle.
   Vet Microbiol, 125(1): 128-40. [Abstract] [Full-text]
2. A scheme for the analysis of microarray measurements based on a quantitative theoretical framework for bacterial cell growth: application to studies of Mycobacterium tuberculosis.
   Microbiology, 153: 3337-49. [Abstract] [Full-text]
3. Development of a base stacking hybridization-based microarray method for rapid identification of clinical isolates.
   Diagn Microbiol Infect Dis, 59(2): 149-56. [Abstract] [Full-text]
4. High-throughput methylation profiling by MCA coupled to CpG island microarray.
   Genome Res, 17(10): 1529-36. [Abstract] [Full-text]
5. Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray.
   Genome Res, 17(10): 1471-7. [Abstract] [Full-text]
6. Oligonucleotide microarray analysis of estrogen receptor alpha-positive postmenopausal breast carcinomas: identification of HRPAP20 and TIMELESS as outstanding candidate markers to predict the response to tamoxifen.
   J Mol Endocrinol, 39(4): 305-18. [Abstract] [Full-text]
7. An aminoglycoside microarray platform for directly monitoring and studying antibiotic resistance.
   Biochemistry, 46(40): 11223-30. [Abstract] [Full-text]
8. Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm.
   Plant Physiol, 145(2): 411-25. [Abstract] [Full-text]
9. Gene expression analysis of estrogenic compounds in the liver of common carp (Cyprinus carpio) using a custom cDNA microarray.
   J Biochem Mol Toxicol, 21(5): 299-311. [Abstract] [Full-text]
10. Automated quantitative analysis of estrogen receptor expression in breast carcinoma does not differ from expert pathologist scoring: a tissue microarray study of 3,484 cases.
    Breast Cancer Res Treat. [Abstract] [Full-text]
11. SAMMD: Staphylococcus aureus Microarray Meta-Database.
    BMC Genomics, 8(1): 351. [Abstract] [Full-text]
12. Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data.
    BMC Bioinformatics, 8(1): 368. [Abstract] [Full-text]
13. A Bayesian approach to estimation and testing in time-course microarray experiments.
    Stat Appl Genet Mol Biol, 6: Article24. [Abstract] [Full-text]
14. Microarray analysis reveals potential mechanisms of BRMS1-mediated metastasis suppression.
    Clin Exp Metastasis, 24(7): 551-65. [Abstract] [Full-text]
15. Quantitative microarray profiling of DNA-binding molecules.
    J Am Chem Soc, 129(40): 12310-9. [Abstract] [Full-text]
16. Gene selection for classification of microarray data based on the Bayes error.
    BMC Bioinformatics, 8(1): 370. [Abstract] [Full-text]
17. A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences.
    BMC Genomics, 8: 284. [Abstract] [Full-text]
18. A novel strategy for mammalian cell surface glycome profiling using lectin microarray.
    Glycobiology, 17(10): 1138-46. [Abstract] [Full-text]
19. Exploring plant responses to aphid feeding using a full Arabidopsis microarray reveals a small number of genes with significantly altered expression.
    Bull Entomol Res, 97(5): 523-32. [Abstract] [Full-text]
20. DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data.
    Genome Biol, 8(9): R190. [Abstract] [Full-text]
21. An oligonucleotide microarray resource for transcriptional profiling of Bradyrhizobium japonicum.
    Mol Plant Microbe Interact, 20(10): 1298-307. [Abstract] [Full-text]
22. Predicting outcome in minimally invasive (T1a and T1b) urothelial bladder carcinoma using a panel of biomarkers: a high throughput tissue microarray analysis.
    BJU Int, 100(5): 1182-7. [Abstract] [Full-text]
23. A gradient microarray electronic nose based on percolating SnO(2) nanowire sensing elements.
    Nano Lett, 7(10): 3182-8. [Abstract] [Full-text]
24. A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection.
    Planta, 226(6): 1423-47. [Abstract] [Full-text]
25. Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines).
    Planta, 226(6): 1389-409. [Abstract] [Full-text]
26. Microarray-based characterization of the Listeria monocytogenes cold regulon in log- and stationary-phase cells.
    Appl Environ Microbiol, 73(20): 6484-98. [Abstract] [Full-text]
27. Identification of genes that are linked with optineurin expression using a combined RNAi-microarray approach.
    Exp Eye Res, 85(4): 450-61. [Abstract] [Full-text]
28. DNA microarray analyses of melanoma gene expression: a decade in the mines.
    Pigment Cell Res, 20(6): 466-84. [Abstract] [Full-text]
29. Weighted analysis of general microarray experiments.
    BMC Bioinformatics, 8(1): 387. [Abstract] [Full-text]
30. Large scale statistical inference of signaling pathways from RNAi and microarray data.
    BMC Bioinformatics, 8(1): 386. [Abstract] [Full-text]
31. Oligonucleotide microarray for molecular characterization and genotyping of Salmonella spp. strains.
    J Antimicrob Chemother, 60(5): 937-46. [Abstract] [Full-text]
32. Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation.
    Cancer Res, 67(20): 9996-10003. [Abstract] [Full-text]
33. Microarray data classification using automatic SVM kernel selection.
    DNA Cell Biol, 26(10): 707-12. [Abstract] [Full-text]
34. Microfluidic systems integrated with two-dimensional surface plasmon resonance phase imaging systems for microarray immunoassay.
    Biosens Bioelectron, 23(4): 466-72. [Abstract] [Full-text]
35. DNA microarray analysis reveals a role for lysophosphatidic acid in the regulation of anti-inflammatory genes in MC3T3-E1 cells.
    Bone, 41(5): 833-41. [Abstract] [Full-text]
36. Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3 beta-specific microarray.
    BMC Genomics, 8: 329. [Abstract] [Full-text]
37. Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants.
    FEBS Lett, 581(26): 5050-4. [Abstract] [Full-text]
38. Analytical and clinical performance of a fully automated cardiac multi-markers strategy based on protein biochip microarray technology.
    Clin Biochem, 40(16): 1245-51. [Abstract] [Full-text]
39. Transcriptional profiling of Alzheimer blood mononuclear cells by microarray.
    Neurobiol Aging, 28(12): 1795-809. [Abstract] [Full-text]
40. The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data.
    Genome Biol, 8(9): R187. [Abstract] [Full-text]
41. Evaluation of automated and conventional microarray hybridization - a question of data quality and best practice?
    Biotechnol Appl Biochem. [Abstract] [Full-text]
42. Cord blood cytokine profile detection in neonates with T1D parents -- monitoring of cellular auto-reactivity using protein microarray.
    Scand J Immunol, 66(5): 563-71. [Abstract] [Full-text]
43. Cell-microarray analysis of antigen-specific B-cells: single cell analysis of antigen receptor expression and specificity.
    Cytometry A, 71(11): 961-7. [Abstract] [Full-text]
44. Microarray Analysis in the Archaeon Halobacterium salinarum Strain R1.
    PLoS ONE, 2(10): e1064. [Abstract] [Full-text]
45. Microarray analysis of nicotine-induced changes in gene expression in a macrophage-like human cell line.
    J Periodontal Res, 42(6): 518-26. [Abstract] [Full-text]
46. Whole mitochondrial genome screening in maternally inherited non-syndromic hearing impairment using a microarray resequencing mitochondrial DNA chip.
    Eur J Hum Genet, 15(11): 1145-55. [Abstract] [Full-text]
47. Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.
    Genome Biol, 8(10): R228. [Abstract] [Full-text]
48. Reproducibility of microarray data: a further analysis of microarray quality control (MAQC)data.
    BMC Bioinformatics, 8(1): 412. [Abstract] [Full-text]
49. Query-driven module discovery in microarray data.
    Bioinformatics, 23(19): 2573-80. [Abstract] [Full-text]
50. PhylArray: phylogenetic probe design algorithm for microarray.
    Bioinformatics, 23(19): 2550-7. [Abstract] [Full-text]
51. Characterization of pancreatic transcription factor Pdx-1 binding sites using promoter microarray and serial analysis of chromatin occupancy.
    J Biol Chem, 282(44): 32084-92. [Abstract] [Full-text]
52. Allele-specific extension on microarray for DNA methylation analysis.
    Anal Chim Acta, 603(2): 199-204. [Abstract] [Full-text]
53. Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray.
    Theor Appl Genet, 115(8): 1109-1126. [Abstract] [Full-text]
54. Construction, visualisation, and clustering of transcription networks from microarray expression data.
    PLoS Comput Biol, 3(10): 2032-42. [Abstract] [Full-text]
55. Exploring the functional landscape of gene expression: directed search of large microarray compendia.
    Bioinformatics, 23(20): 2692-9. [Abstract] [Full-text]
56. Expression ratio evaluation in two-colour microarray experiments is significantly improved by correcting image misalignment.
    Bioinformatics, 23(20): 2686-91. [Abstract] [Full-text]
57. Exploiting sample variability to enhance multivariate analysis of microarray data.
    Bioinformatics, 23(20): 2733-40. [Abstract] [Full-text]
58. A gene expression bar code for microarray data.
    Nat Methods, 4(11): 911-3. [Abstract] [Full-text]
59. Microarray-based genomic selection for high-throughput resequencing.
    Nat Methods, 4(11): 907-9. [Abstract] [Full-text]
60. Direct selection of human genomic loci by microarray hybridization.
    Nat Methods, 4(11): 903-5. [Abstract] [Full-text]
61. General microarray technique for immobilization and screening of natural glycans.
    Anal Chem, 79(21): 8107-13. [Abstract] [Full-text]

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