Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 4 (2007), Issue 11 (November)

1. Experimental approach for assessing the outcome accuracy of antibody microarray experiments.
   J Proteome Res, 6(11): 4210-7. [Abstract] [Full-text]
2. High confidence rule mining for microarray analysis.
   IEEE/ACM Trans Comput Biol Bioinform, 4(4): 611-23. [Abstract] [Full-text]
3. Data-dependent kernel machines for microarray data classification.
   IEEE/ACM Trans Comput Biol Bioinform, 4(4): 583-95. [Abstract] [Full-text]
4. Integrative microarray analysis of pathways dysregulated in metastatic prostate cancer.
   Cancer Res, 67(21): 10296-303. [Abstract] [Full-text]
5. Determination of dual effects of parathyroid hormone on skeletal gene expression in vivo by microarray and network analysis.
   J Biol Chem, 282(45): 33086-97. [Abstract] [Full-text]
6. Validation of peptide epitope microarray experiments and extraction of quality data.
   J Immunol Methods, 328(1): 1-13. [Abstract] [Full-text]
7. Identification of genes associated with tumorigenesis of meibomian cell carcinoma by microarray analysis.
   Genomics, 90(5): 559-66. [Abstract] [Full-text]
8. DNA microarray for genotyping multidrug-resistant Pseudomonas aeruginosa clinical isolates.
   Diagn Microbiol Infect Dis, 59(3): 325-38. [Abstract] [Full-text]
9. Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
   BMC Bioinformatics, 8(1): 427. [Abstract] [Full-text]
10. Steady state approach to model gene regulatory networks-Simulation of microarray experiments.
    Biosystems, 90(3): 636-55. [Abstract] [Full-text]
11. DNA microarray-based detection and identification of fungal pathogens in clinical samples from neutropenic patients.
    J Clin Microbiol, 45(11): 3743-53. [Abstract] [Full-text]
12. Rapid microarray-based method for monitoring of all currently known single-nucleotide polymorphisms associated with parasite resistance to antimalaria drugs.
    J Clin Microbiol, 45(11): 3685-91. [Abstract] [Full-text]
13. Use of a DNA microarray for simultaneous detection of antibiotic resistance genes among staphylococcal clinical isolates.
    J Clin Microbiol, 45(11): 3514-21. [Abstract] [Full-text]
14. Utilizing microarray spot characteristics to improve cross-species hybridization results.
    Genomics, 90(5): 636-645. [Abstract] [Full-text]
15. Microarray analysis of rejection in human kidney transplants using pathogenesis-based transcript sets.
    Am J Transplant, 7(12): 2712-22. [Abstract] [Full-text]
16. Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes.
    PLoS Comput Biol, 3(11): e208. [Abstract] [Full-text]
17. Biomolecular interaction monitoring of autoantibodies by scanning surface plasmon resonance microarray imaging.
    J Am Chem Soc, 129(45): 14013-8. [Abstract] [Full-text]
18. Vascular microarray profiling in two models of hypertension identifies Cav-1, Rgs2 and Rgs5 as antihypertensive targets.
    BMC Genomics, 8(1): 404. [Abstract] [Full-text]
19. Immunohistopathological re-evaluation of adenocarcinoma of the lung with mixed subtypes using a tissue microarray technique and hierarchical clustering analysis.
    Pathol Int, 57(12): 765-74. [Abstract] [Full-text]
20. Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.
    Nucleic Acids Res, 35(19): e128. [Abstract] [Full-text]
21. DNA MICROARRAY-BASED ECOTOXICOLOGICAL BIOMARKER DISCOVERY IN A SMALL FISH MODEL SPECIES.
    Environ Toxicol Chem. [Abstract] [Full-text]
22. DNA MICROARRAY APPLICATION IN ECOTOXICOLOGY: EXPERIMENTAL DESIGN, MICROARRAY SCANNING, AND FACTORS IMPACTING TRANSCRIPTIONAL PROFILES IN A SMALL FISH SPECIES.
    Environ Toxicol Chem. [Abstract] [Full-text]
23. cDNA microarray analysis of the expression profiles of Trichophyton rubrum in response to novel synthetic fatty acid synthase inhibitor PHS11A.
    Fungal Genet Biol, 44(12): 1252-61. [Abstract] [Full-text]
24. UV-Patterned Poly(ethylene glycol) Matrix for Microarray Applications.
    Biomacromolecules, 8(11): 3511-8. [Abstract] [Full-text]
25. A quantitative analysis of N-myc downstream regulated gene 2 (NDRG 2) in human tissues and cell lysates by reverse-phase protein microarray.
    Clin Chim Acta, 387(1): 84-9. [Abstract] [Full-text]
26. Microarray-based method to analyze methylation status of E-cadherin gene in leukemia.
    Clin Chim Acta, 387(1): 97-104. [Abstract] [Full-text]
27. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis.
    BMC Genomics, 8(1): 414. [Abstract] [Full-text]
28. A microarray study of gene and protein regulation in human and rat brain following middle cerebral artery occlusion.
    BMC Neurosci, 8(1): 93. [Abstract] [Full-text]
29. Multiple Hybridization-extension Sequencing (MHES) on Microarray.
    J Biochem (Tokyo), 142(5): 605-11. [Abstract] [Full-text]
30. Candidate genes for the progression of malignant gliomas identified by microarray analysis.
    Neurosurg Rev, 31(1): 83-9; discussion 89-90. [Abstract] [Full-text]
31. Identification of genes expressed in the mouse limb using a novel ZPA microarray approach.
    Gene Expr Patterns, 8(1): 19-26. [Abstract] [Full-text]
32. Application of a correlation correction factor in a microarray cross-platform reproducibility study.
    BMC Bioinformatics, 8(1): 447. [Abstract] [Full-text]
33. Mining pathway signatures from microarray data and relevant biological knowledge.
    J Biomed Inform, 40(6): 698-706. [Abstract] [Full-text]
34. Functional profiling of microarray experiments using text-mining derived bioentities.
    Bioinformatics, 23(22): 3098-9. [Abstract] [Full-text]
35. Context-dependent clustering for dynamic cellular state modeling of microarray gene expression.
    Bioinformatics, 23(22): 3039-47. [Abstract] [Full-text]
36. Microarray analysis of aberrant gene expression in actinic keratosis: effect of the Toll-like receptor-7 agonist imiquimod.
    Br J Dermatol, 157(6): 1132-47. [Abstract] [Full-text]
37. Feature construction from synergic pairs to improve microarray-based classification.
    Bioinformatics, 23(21): 2866-72. [Abstract] [Full-text]
38. Extracting three-way gene interactions from microarray data.
    Bioinformatics, 23(21): 2903-9. [Abstract] [Full-text]
39. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data.
    Bioinformatics, 23(21): 2897-902. [Abstract] [Full-text]
40. Yersinia genome diversity disclosed by Yersinia pestis genome-wide DNA microarray.
    Can J Microbiol, 53(11): 1211-21. [Abstract] [Full-text]
41. Use of genomic DNA control features and predicted operon structure in microarray data analysis: ArrayLeaRNA - a Bayesian approach.
    BMC Bioinformatics, 8(1): 455. [Abstract] [Full-text]
42. Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design.
    BMC Genomics, 8(1): 423. [Abstract] [Full-text]
43. Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues.
    PLoS ONE, 2(11): e1203. [Abstract] [Full-text]
44. A comparison of bootstrap methods and an adjusted bootstrap approach for estimating the prediction error in microarray classification.
    Stat Med, 26(29): 5320-34. [Abstract] [Full-text]
45. Theory and limitations of genetic network inference from microarray data.
    Ann N Y Acad Sci, 1115: 51-72. [Abstract] [Full-text]
46. A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R.
    Brief Bioinform, 8(6): 415-31. [Abstract] [Full-text]
47. Microarray analysis of Escherichia coli strains from interstitial beach waters of Lake Huron (Canada).
    Appl Environ Microbiol, 73(23): 7757-8. [Abstract] [Full-text]
48. Microarray analysis of vanillin-regulated gene expression profile in human hepatocarcinoma cells.
    Pharmacol Res, 56(6): 474-82. [Abstract] [Full-text]
49. A small molecule microarray platform to select RNA internal loop-ligand interactions.
    ACS Chem Biol, 2(11): 745-54. [Abstract] [Full-text]
50. Effect of menopause on gene expression profiles of circulating monocytes: a pilot in vivo microarray study.
    J Genet Genomics, 34(11): 974-83. [Abstract] [Full-text]
51. Antibody microarray analysis of cell surface antigens on CD4+ and CD8+ T cells from HIV+ individuals correlates with disease stages.
    Retrovirology, 4(1): 83. [Abstract] [Full-text]
52. Detection of Salmonella enterica subpopulations by phenotype microarray antibiotic resistance patterns.
    Appl Environ Microbiol, 73(23): 7753-6. [Abstract] [Full-text]
53. A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies.
    Proc Natl Acad Sci U S A, 104(47): 18371-6. [Abstract] [Full-text]
54. Microarray-Formatted Clinical Biomarker Assay Development Using Peptide Aptamers to Anterior Gradient-2.
    Biochemistry, 46(48): 13742-13751. [Abstract] [Full-text]
55. Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data.
    Bioinformatics, 23(23): 3170-7. [Abstract] [Full-text]
56. Gene Organization in Rice Revealed by Full-Length cDNA Mapping and Gene Expression Analysis through Microarray.
    PLoS ONE, 2(11): e1235. [Abstract] [Full-text]
57. Correlation Index-Based Responsible-Enzyme Gene Screening (CIRES), a Novel DNA Microarray-Based Method for Enzyme Gene Involved in Glycan Biosynthesis.
    PLoS ONE, 2(11): e1232. [Abstract] [Full-text]
58. Thermodynamic behavior of short oligonucleotides in microarray hybridizations can be described using Gibbs free energy in a nearest-neighbor model.
    J Phys Chem B, 111(48): 13583-90. [Abstract] [Full-text]
59. Quantitative justification of the change from 10% to 30% for human epidermal growth factor receptor 2 scoring in the American Society of Clinical Oncology/College of American Pathologists guidelines: tumor heterogeneity in breast cancer and its implications for tissue microarray based assessment of outcome.
    J Clin Oncol, 25(34): 5418-25. [Abstract] [Full-text]

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