Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 4 (2007), Issue 7 (July)

1. Development of an oligonucleotide-based DNA microarray for transcriptional analysis of Choristoneura fumiferana nucleopolyhedrovirus (CfMNPV) genes.
   J Virol Methods, 143(2): 175-85. [Abstract] [Full-text]
2. Microarray-based molecular detection of foot-and-mouth disease, vesicular stomatitis and swine vesicular disease viruses, using padlock probes.
   J Virol Methods, 143(2): 200-6. [Abstract] [Full-text]
3. A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data.
   BMC Bioinformatics, 8(1): 228. [Abstract] [Full-text]
4. Additive risk survival model with microarray data.
   BMC Bioinformatics, 8: 192. [Abstract] [Full-text]
5. Immunodominant Francisella tularensis antigens identified using proteome microarray. ((c))Crown Copyright 2007 Dstl.
   Proteomics, 7(13): 2172-83. [Abstract] [Full-text]
6. Event-specific detection of seven genetically modified soybean and maizes using multiplex-PCR coupled with oligonucleotide microarray.
   J Agric Food Chem, 55(14): 5575-9. [Abstract] [Full-text]
7. Orthogonal projections to latent structures as a strategy for microarray data normalization.
   BMC Bioinformatics, 8: 207. [Abstract] [Full-text]
8. Growth Plate Zonal Microarray Analysis Shows Upregulation of Extracellular Matrix Genes and Downregulation of Metalloproteinases and Cathepsins following Irradiation.
   Calcif Tissue Int, 81(1): 26-38. [Abstract] [Full-text]
9. Microarray analysis of flax (Linum usitatissimum L.) stems identifies transcripts enriched in fibre-bearing phloem tissues.
   Mol Genet Genomics, 278(2): 149-65. [Abstract] [Full-text]
10. Verification of endometrial tissue biomarkers previously discovered using mass spectrometry-based proteomics by means of immunohistochemistry in a tissue microarray format.
    J Proteome Res, 6(7): 2648-55. [Abstract] [Full-text]
11. Proteome analysis and tissue microarray for profiling protein markers associated with lymph node metastasis in colorectal cancer.
    J Proteome Res, 6(7): 2495-501. [Abstract] [Full-text]
12. A DNA microarray analysis of chemokine and receptor genes in the rat dental follicle--role of secreted frizzled-related protein-1 in osteoclastogenesis.
    Bone, 41(2): 266-72. [Abstract] [Full-text]
13. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray.
    J Clin Microbiol, 45(7): 2340-3. [Abstract] [Full-text]
14. SNPTools: a software tool for visualization and analysis of microarray data.
    Bioinformatics, 23(12): 1550-2. [Abstract] [Full-text]
15. Transcriptional profiles of primary metabolism and signal transduction-related genes in response to water stress in field-grown sunflower genotypes using a thematic cDNA microarray.
    Planta, 226(3): 601-17. [Abstract] [Full-text]
16. Group SCAD regression analysis for microarray time course gene expression data.
    Bioinformatics, 23(12): 1486-94. [Abstract] [Full-text]
17. Growth hormone regulation of metabolic gene expression in muscle: a microarray study in hypopituitary men.
    Am J Physiol Endocrinol Metab, 293(1): E364-71. [Abstract] [Full-text]
18. Construction and validation of a first-generation Bordetella bronchiseptica long-oligonulceotide microarray by transcriptional profiling the Bvg regulon.
    BMC Genomics, 8(1): 220. [Abstract] [Full-text]
19. An apoptotic molecular network identified by microarray: on the TRAIL to new insights in epithelial ovarian cancer.
    Cancer, 110(2): 297-308. [Abstract] [Full-text]
20. Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis.
    Bioinformatics, 23(12): 1495-502. [Abstract] [Full-text]
21. Transcriptome profiling of Lilium longiflorum generative cells by cDNA microarray.
    Plant Cell Rep, 26(7): 1045-52. [Abstract] [Full-text]
22. Microarray-based screening of jasmonate-responsive genes in Arabidopsis thaliana.
    Plant Cell Rep, 26(7): 1053-63. [Abstract] [Full-text]
23. Microarray analysis of apple gene expression engaged in early fruit development.
    Plant Cell Rep, 26(7): 917-26. [Abstract] [Full-text]
24. Autocorrelation analysis reveals widespread spatial biases in microarray experiments.
    BMC Genomics, 8: 164. [Abstract] [Full-text]
25. Possible utilization of in vitro synthesized mRNAs specifically expressed in certain tissues as standards for quantitative evaluation of the results of microarray analysis.
    J Biochem Biophys Methods, 70(5): 755-60. [Abstract] [Full-text]
26. A ratiometric lectin microarray approach to analysis of the dynamic mammalian glycome.
    Proc Natl Acad Sci U S A, 104(28): 11534-9. [Abstract] [Full-text]
27. A microarray gene expression study of the molecular pharmacology of lithium carbonate on mouse brain mRNA to understand the neurobiology of mood stabilization and treatment of bipolar affective disorder.
    Pharmacogenet Genomics, 17(8): 605-17. [Abstract] [Full-text]
28. Laser capture-microarray analysis of Lim1 mutant kidney development.
    Genesis, 45(7): 432-9. [Abstract] [Full-text]
29. Novel and simple transformation algorithm for combining microarray data sets.
    BMC Bioinformatics, 8: 218. [Abstract] [Full-text]
30. Arrayed primer extension in the "array of arrays" format: a rational approach for microarray-based SNP genotyping.
    Genet Test, 11(2): 160-6. [Abstract] [Full-text]
31. Prostatic stem cell marker identified by cDNA microarray in mouse.
    J Urol, 178(2): 686-91. [Abstract] [Full-text]
32. Solving satisfiability problems using a novel microarray-based DNA computer.
    Biosystems, 90(1): 242-52. [Abstract] [Full-text]
33. Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers.
    Biosystems, 90(1): 78-86. [Abstract] [Full-text]
34. Difference-based clustering of short time-course microarray data with replicates.
    BMC Bioinformatics, 8(1): 253. [Abstract] [Full-text]
35. High-throughput screening of monoclonal antibodies against plant cell wall glycans by hierarchical clustering of their carbohydrate microarray binding profiles.
    Glycoconj J. [Abstract] [Full-text]
36. Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis.
    J Biotechnol, 131(1): 34-44. [Abstract] [Full-text]
37. Biochemical pathways analysis of microarray results: regulation of myogenesis in pigs.
    BMC Dev Biol, 7: 66. [Abstract] [Full-text]
38. Methodologies towards the development of an oligonucleotide microarray for determination of Salmonella serotypes.
    J Microbiol Methods, 70(2): 261-71. [Abstract] [Full-text]
39. Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease.
    Nucleic Acids Res, 35: W105-14. [Abstract] [Full-text]
40. FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
    Nucleic Acids Res, 35: W91-6. [Abstract] [Full-text]
41. Tissue microarray is inappropriate for analysis of BCL6 expression in diffuse large B-cell lymphoma.
    Eur J Haematol, 79(2): 146-9. [Abstract] [Full-text]
42. HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments.
    BMC Bioinformatics, 8(1): 256. [Abstract] [Full-text]
43. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping.
    Mod Pathol, 20(8): 811-20. [Abstract] [Full-text]
44. Celsius: a community resource for Affymetrix microarray data.
    Genome Biol, 8(6): R112. [Abstract] [Full-text]
45. Microarray analyses and molecular profiling of steatosis induction in immortalized human hepatocytes.
    Lab Invest, 87(8): 792-806. [Abstract] [Full-text]
46. Getting it right: designing microarray (and not 'microawry') comparative genomic hybridization studies for cancer research.
    Lab Invest, 87(8): 737-54. [Abstract] [Full-text]
47. A microarray analysis for genes regulated by interferon-{tau} in ovine luminal epithelial cells.
    Reproduction, 134(1): 123-35. [Abstract] [Full-text]
48. A microarray for microRNA profiling in mouse testis tissues.
    Reproduction, 134(1): 73-79. [Abstract] [Full-text]
49. Microarray for serotyping of Bartonella species.
    BMC Microbiol, 7: 59. [Abstract] [Full-text]
50. Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.
    BMC Genomics, 8: 180. [Abstract] [Full-text]
51. Development of a novel microarray methodology for the study of SNPs in the promoter region of the TNF-alpha gene-Their association with obstructive pulmonary disease in Greek patients.
    Clin Biochem, 40(12): 843-50. [Abstract] [Full-text]
52. Microarray analyses of newborn mouse ovaries lacking Nobox.
    Biol Reprod, 77(2): 312-9. [Abstract] [Full-text]
53. Biases induced by pooling samples in microarray experiments.
    Bioinformatics, 23(13): i313-8. [Abstract] [Full-text]
54. Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
    Bioinformatics, 23(13): i282-8. [Abstract] [Full-text]
55. CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data.
    Bioinformatics, 23(13): 1700-1. [Abstract] [Full-text]
56. Melatonin inhibits lipopolysaccharide-induced CC chemokine subfamily gene expression in human peripheral blood mononuclear cells in a microarray analysis.
    J Pineal Res, 43(2): 121-9. [Abstract] [Full-text]
57. Improving gene set analysis of microarray data by SAM-GS.
    BMC Bioinformatics, 8: 242. [Abstract] [Full-text]
58. Establishment of SV40T-transformed human dermal papilla cells and identification of dihydrotestosterone-regulated genes by cDNA microarray.
    J Dermatol Sci, 47(3): 201-8. [Abstract] [Full-text]
59. Expression of p53, p16 and cyclooxygenase-2 in esophageal cancer with tissue microarray.
    J Dig Dis, 8(3): 133-8. [Abstract] [Full-text]
60. Expression of fascin in oral and oropharyngeal squamous cell carcinomas has prognostic significance - a tissue microarray study of 129 cases.
    Histopathology, 51(2): 173-83. [Abstract] [Full-text]
61. Classification of heterogeneous microarray data by maximum entropy kernel.
    BMC Bioinformatics, 8(1): 267. [Abstract] [Full-text]
62. Identification of new reference genes for the normalisation of canine osteoarthritic joint tissue transcripts from microarray data.
    BMC Mol Biol, 8(1): 62. [Abstract] [Full-text]
63. Gene-expression profiling of human mononuclear cells from welders using cDNA microarray.
    J Toxicol Environ Health A, 70(15): 1264-77. [Abstract] [Full-text]
64. DNA microarray analysis: principles and clinical impact.
    Hematology, 12(4): 271-87. [Abstract] [Full-text]
65. PCR-verified microarray analysis and functional in vitro studies indicate a role of alpha-tocopherol in vesicular transport.
    Free Radic Res, 41(8): 930-42. [Abstract] [Full-text]
66. Neoglycolipid Probes Prepared via Oxime Ligation for Microarray Analysis of Oligosaccharide-Protein Interactions.
    Chem Biol, 14(7): 847-59. [Abstract] [Full-text]
67. Optimization of oligonucleotide microarray fabricated by spotting 65-mer.
    Anal Biochem, 368(1): 61-9. [Abstract] [Full-text]
68. Microarray-based CGH detects chromosomal mosaicism not revealed by conventional cytogenetics.
    Am J Med Genet A, 143(15): 1679-86. [Abstract] [Full-text]
69. Microarray analysis in the zebrafish (Danio rerio) liver and telencephalon after exposure to low concentration of 17alpha-ethinylestradiol.
    Aquat Toxicol, 84(1): 38-49. [Abstract] [Full-text]
70. Integrated olfactory receptor and microarray gene expression databases.
    BMC Bioinformatics, 8: 231. [Abstract] [Full-text]
71. High-throughput carbohydrate microarray profiling of 27 antibodies demonstrates widespread specificity problems.
    Glycobiology, 17(8): 17C-23C. [Abstract] [Full-text]
72. Identification of novel retinal target genes of thyroid hormone in the human WERI cells by expression microarray analysis.
    Vision Res, 47(17): 2314-26. [Abstract] [Full-text]
73. Identification of novel genes expressed during mouse tooth development by microarray gene expression analysis.
    Dev Dyn, 236(8): 2245-57. [Abstract] [Full-text]
74. Microarray detection of duplex and triplex DNA binders with DNA-modified gold nanoparticles.
    Anal Chem, 79(15): 6037-41. [Abstract] [Full-text]
75. Reverse-phase versus sandwich antibody microarray, technical comparison from a clinical perspective.
    Anal Chem, 79(15): 5817-25. [Abstract] [Full-text]

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