Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 4 (2007), Issue 9 (September)

1. Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
   Nucleic Acids Res, 35(15): e99. [Abstract] [Full-text]
2. Identification of novel markers expressed during fin regeneration by microarray analysis in medaka fish.
   Dev Dyn, 236(9): 2685-93. [Abstract] [Full-text]
3. Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization.
   BMC Genomics, 8(1): 305. [Abstract] [Full-text]
4. Stratification bias in low signal microarray studies.
   BMC Bioinformatics, 8(1): 326. [Abstract] [Full-text]
5. Clinical and pathological correlations in male breast cancer: intratumoral aromatase expression via tissue microarray.
   Breast Cancer Res Treat, 105(2): 169-75. [Abstract] [Full-text]
6. Laser capture microdissection and microarray analysis of dividing neural progenitor cells from the adult rat hippocampus.
   Eur J Neurosci, 26(5): 1079-90. [Abstract] [Full-text]
7. Reagent preparation and storage for amplification of microarray hybridization targets with a fully automated system.
   Assay Drug Dev Technol, 5(4): 551-8. [Abstract] [Full-text]
8. Laser capture microdissection-microarray analysis of focal segmental glomerulosclerosis glomeruli.
   Nephron Exp Nephrol, 107(1): e30-40. [Abstract] [Full-text]
9. Bringing electrons and microarray technology together.
   J Phys Chem B, 111(36): 10636-8. [Abstract] [Full-text]
10. Gene expression profile analysis of the spontaneous reversal of rat hepatic fibrosis by cDNA microarray.
    Dig Dis Sci, 52(10): 2591-600. [Abstract] [Full-text]
11. Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray.
    Environ Microbiol, 9(10): 2522-38. [Abstract] [Full-text]
12. Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri.
    Mol Immunol, 45(2): 553-66. [Abstract] [Full-text]
13. Visualization-based cancer microarray data classification analysis.
    Bioinformatics, 23(16): 2147-54. [Abstract] [Full-text]
14. Oligonucleotide microarray design for detection and serotyping of human respiratory adenoviruses by using a virtual amplicon retrieval software.
    J Virol Methods, 145(2): 127-36. [Abstract] [Full-text]
15. Increased expression of ephrin A1 in brain arteriovenous malformation: DNA microarray analysis.
    Neurosurg Rev, 30(4): 299-305; discussion 305. [Abstract] [Full-text]
16. Predicting survival from microarray data--a comparative study.
    Bioinformatics, 23(16): 2080-7. [Abstract] [Full-text]
17. A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments.
    Bioinformatics, 23(16): 2073-9. [Abstract] [Full-text]
18. Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
    Bioinformatics, 23(16): 2063-72. [Abstract] [Full-text]
19. Sharp simultaneous confidence intervals for the means of selected populations with application to microarray data analysis.
    Biometrics, 63(3): 767-76. [Abstract] [Full-text]
20. Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization.
    Gene, 401(1): 12-8. [Abstract] [Full-text]
21. Meta-analysis of microarray-derived data from PACAP-deficient adrenal gland in vivo and PACAP-treated chromaffin cells identifies distinct classes of PACAP-regulated genes.
    Peptides, 28(9): 1871-82. [Abstract] [Full-text]
22. Microarray analyses of pituitary adenylate cyclase activating polypeptide (PACAP)-regulated gene targets in sympathetic neurons.
    Peptides, 28(9): 1856-70. [Abstract] [Full-text]
23. Direct detection of cytolytic T lymphocyte-mediated cytotoxicity on antigen-transfected cell microarray.
    J Immunol Methods, 326(1): 1-9. [Abstract] [Full-text]
24. ESVM: Evolutionary support vector machine for automatic feature selection and classification of microarray data.
    Biosystems, 90(2): 516-28. [Abstract] [Full-text]
25. Randomized probe selection algorithm for microarray design.
    J Theor Biol, 248(3): 512-21. [Abstract] [Full-text]
26. Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori.
    Genome Biol, 8(8): R162. [Abstract] [Full-text]
27. Microarray analysis of leukocytapheresis-induced changes in gene expression patterns of peripheral blood mononuclear cells in patients with ulcerative colitis.
    Ther Apher Dial, 11(5): 331-6. [Abstract] [Full-text]
28. Functional study of Capsicum annuum fatty acid desaturase 1 cDNA clone induced by Tobacco mosaic virus via microarray and virus-induced gene silencing.
    Biochem Biophys Res Commun, 362(3): 554-61. [Abstract] [Full-text]
29. Microarray analysis of gliomas reveals chromosomal position-associated gene expression patterns and identifies potential immunotherapy targets.
    J Neurooncol, 85(1): 11-24. [Abstract] [Full-text]
30. Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer.
    Bioinformatics, 23(17): 2273-80. [Abstract] [Full-text]
31. MAnGO: an interactive R-based tool for two-colour microarray analysis.
    Bioinformatics, 23(17): 2339-41. [Abstract] [Full-text]
32. Annotation-based distance measures for patient subgroup discovery in clinical microarray studies.
    Bioinformatics, 23(17): 2256-64. [Abstract] [Full-text]
33. Human endometrium mRNA profile assessed by oligonucleotide three-dimensional microarray.
    Gynecol Endocrinol. [Abstract] [Full-text]
34. Protein microarray analysis as a tool for monitoring cellular autoreactivity in type 1 diabetes patients and their relatives.
    Pediatr Diabetes, 8(5): 252-60. [Abstract] [Full-text]
35. Filtering genes to improve sensitivity in oligonucleotide microarray data analysis.
    Nucleic Acids Res, 35(16): e102. [Abstract] [Full-text]
36. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA.
    BMC Biotechnol, 7(1): 57. [Abstract] [Full-text]
37. Rapid and sensitive detection of fluoroquinolone-resistant Escherichia coli from urine samples using a genotyping DNA microarray.
    Int J Med Microbiol, 297(6): 417-29. [Abstract] [Full-text]
38. Switching benchmarks in cancer of unknown primary: From autopsy to microarray.
    Eur J Cancer, 43(14): 2026-36. [Abstract] [Full-text]
39. Comprehensive analysis of gene expression in testes producing haploid germ cells using DNA microarray analysis.
    Int J Androl, 30(5): 462-75. [Abstract] [Full-text]
40. Microarray analysis of cytokine activation of apoptosis pathways in the thyroid.
    Endocrinology, 148(10): 4844-52. [Abstract] [Full-text]
41. RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.
    Mol Genet Genomics, 278(4): 421-31. [Abstract] [Full-text]
42. Microarray analysis of glial cells resistant to JCV infection suggests a correlation between viral infection and inflammatory cytokine gene expression.
    Virology, 366(2): 394-404. [Abstract] [Full-text]
43. Polymeric optical microscreen for high-resolution surface plasmon resonance microarray imaging.
    Langmuir, 23(20): 10403-6. [Abstract] [Full-text]
44. Quantitative nuclease protection assay in paraffin-embedded tissue replicates prognostic microarray gene expression in diffuse large-B-cell lymphoma.
    Lab Invest, 87(10): 979-97. [Abstract] [Full-text]
45. Microarray analyses of differentially expressed human genes and biological processes in ECV304 cells infected with rubella virus.
    J Med Virol, 79(11): 1783-91. [Abstract] [Full-text]
46. A Unified Framework for Finding Differentially Expressed Genes from Microarray Experiments.
    BMC Bioinformatics, 8(1): 347. [Abstract] [Full-text]
47. Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis.
    Physiol Genomics, 31(1): 63-74. [Abstract] [Full-text]
48. cDNA microarray analysis of cyclosporin A (CsA)-treated human peripheral blood mononuclear cells reveal modulation of genes associated with apoptosis, cell-cycle regulation and DNA repair.
    Mol Cell Biochem, 304(1): 235-41. [Abstract] [Full-text]
49. Detection of Aspergillus carbonarius and other black aspergilli from grapes by DNA OLISA microarray.
    Food Addit Contam, 24(10): 1138-47. [Abstract] [Full-text]
50. Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome.
    BMC Genomics, 8(1): 331. [Abstract] [Full-text]
51. Multiplex asymmetric PCR-based oligonucleotide microarray for detection of drug resistance genes containing single mutations in Enterobacteriaceae.
    Antimicrob Agents Chemother, 51(10): 3707-13. [Abstract] [Full-text]
52. Microarray gene expression profiling for predicting complete response to preoperative chemoradiotherapy in patients with advanced rectal cancer.
    Dis Colon Rectum, 50(9): 1342-53. [Abstract] [Full-text]
53. cDNA Microarray Analysis of Adaptive Changes after Renal Ablation in a Sclerosis-Resistant Mouse Strain.
    Kidney Blood Press Res, 30(6): 377-387. [Abstract] [Full-text]
54. miChip: a microarray platform for expression profiling of microRNAs based on locked nucleic acid (LNA) oligonucleotide capture probes.
    Methods, 43(2): 146-52. [Abstract] [Full-text]
55. Evaluation of bone-derived and marrow-derived vascular endothelial cells by microarray analysis.
    J Cell Biochem, 102(2): 463-72. [Abstract] [Full-text]
56. Differential analysis for high density tiling microarray data.
    BMC Bioinformatics, 8(1): 359. [Abstract] [Full-text]
57. A moment-based method for estimating the proportion of true null hypotheses and its application to microarray gene expression data.
    Biostatistics, 8(4): 744-55. [Abstract] [Full-text]
58. Identification of upper respiratory tract pathogens using electrochemical detection on an oligonucleotide microarray.
    PLoS ONE, 2(9): e924. [Abstract] [Full-text]
59. Optimization of a Microarray Sandwich-ELISA against hINF-gamma on a Modified Nitrocellulose Membrane.
    Biotechnol Prog. [Abstract] [Full-text]
60. Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins.
    Mol Microbiol, 66(2): 315-28. [Abstract] [Full-text]
61. A comparative study of genome-wide SNP, CGH microarray and protein expression analysis to explore genotypic and phenotypic mechanisms of acquired antiestrogen resistance in breast cancer.
    Breast Cancer Res Treat. [Abstract] [Full-text]
62. Linking microarray reporters with protein functions.
    BMC Bioinformatics, 8(1): 360. [Abstract] [Full-text]
63. Direct immobilization of DNA oligomers onto the amine-functionalized glass surface for DNA microarray fabrication through the activation-free reaction of oxanine.
    Nucleic Acids Res, 35(17): e110. [Abstract] [Full-text]
64. A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments.
    BMC Bioinformatics, 8(1): 364. [Abstract] [Full-text]
65. Microarray gene expression profiling of human osteoarthritic bone suggests altered bone remodelling, WNT and TGF beta/BMP signalling.
    Arthritis Res Ther, 9(5): R100. [Abstract] [Full-text]

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