Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 5 (2008), Issue 11 (November)

1. A 200-antibody microarray biochip for environmental monitoring: searching for universal microbial biomarkers through immunoprofiling.
   Anal Chem, 80(21): 7970-9. [Abstract] [Full-text]
2. A microarray-based transcriptomic time-course of hyper- and hypo-osmotic stress signaling events in the euryhaline fish Gillichthys mirabilis: osmosensors to effectors.
   J Exp Biol, 211: 3636-49. [Abstract] [Full-text]
3. A multiple-loop, double-cube microarray design applied to prostate cancer cell lines with variable sensitivity to histone deacetylase inhibitors.
   Clin Cancer Res, 14(21): 6886-94. [Abstract] [Full-text]
4. Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization.
   BMC Genomics, 9: 497. [Abstract] [Full-text]
5. Development and validation of an oligonucleotide microarray for immuno-inflammatory genes of ruminants.
   Vet Res Commun, 32(8): 647-57. [Abstract] [Full-text]
6. Prognostic implication of p27Kip1, Skp2 and Cks1 expression in renal cell carcinoma: a tissue microarray study.
   J Exp Clin Cancer Res, 27: 51. [Abstract] [Full-text]
7. A C-type lectin of Caenorhabditis elegans: its sugar-binding property revealed by glycoconjugate microarray analysis.
   Biochem Biophys Res Commun, 377(1): 303-6. [Abstract] [Full-text]
8. BATS: a Bayesian user-friendly software for analyzing time series microarray experiments.
   BMC Bioinformatics, 9: 415. [Abstract] [Full-text]
9. Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data.
   Bioinformatics, 24(22): 2650-6. [Abstract] [Full-text]
10. Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.
    Methods Mol Biol, 507: 89-106. [Abstract] [Full-text]
11. Electronic microarray screening of podocin mutations: a single-center study.
    Int Urol Nephrol, 40(4): 1045-1051. [Abstract] [Full-text]
12. Validation of tissue microarray technology in ovarian cancer: results from the Nurses' Health Study.
    Cancer Epidemiol Biomarkers Prev, 17(11): 3043-50. [Abstract] [Full-text]
13. Microarray-based genomic profiling reveals novel genomic aberrations in follicular lymphoma which associate with patient survival and gene expression status.
    Genes Chromosomes Cancer, 48(1): 39-54. [Abstract] [Full-text]
14. Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.
    Exp Parasitol, 120(4): 357-63. [Abstract] [Full-text]
15. A novel DNA microarray for rapid diagnosis of enteropathogenic bacteria in stool specimens of patients with diarrhea.
    J Microbiol Methods, 75(3): 566-71. [Abstract] [Full-text]
16. Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray.
    Biotechnol Bioeng, 101(6): 1359-65. [Abstract] [Full-text]
17. Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface.
    Nucleic Acids Res, 36(20): e132. [Abstract] [Full-text]
18. Microarray-based study of carbohydrate-protein binding by gold nanoparticle probes.
    Anal Chem, 80(22): 8822-7. [Abstract] [Full-text]
19. Randomization in laboratory procedure is key to obtaining reproducible microarray results.
    PLoS ONE, 3(11): e3724. [Abstract] [Full-text]
20. A review of independent component analysis application to microarray gene expression data.
    Biotechniques, 45(5): 501-20. [Abstract] [Full-text]
21. Consensus and Meta-analysis regulatory networks for combining multiple microarray gene expression datasets.
    J Biomed Inform, 41(6): 914-26. [Abstract] [Full-text]
22. Segmentation of cDNA microarray images by kernel density estimation.
    J Biomed Inform, 41(6): 1021-7. [Abstract] [Full-text]
23. Microarray-based detection of viruses causing vesicular or vesicular-like lesions in livestock animals.
    Vet Microbiol, 133(1): 145-53. [Abstract] [Full-text]
24. CGcgh: a tool for molecular karyotyping using DNA microarray-based comparative genomic hybridization (array-CGH).
    J Biomed Sci, 15(6): 687-96. [Abstract] [Full-text]
25. DNA microarray analyses of genes expressed differentially in 3T3-L1 adipocytes co-cultured with murine macrophage cell line RAW264.7 in the presence of the toll-like receptor 4 ligand bacterial endotoxin.
    Int J Obes (Lond), 32(11): 1725-9. [Abstract] [Full-text]
26. Genetic differences among Staphylococcus aureus isolates from dairy ruminant species: a single-dye DNA microarray approach.
    Vet Microbiol, 133(1): 105-14. [Abstract] [Full-text]
27. Transcriptome profiling in crustaceans as a tool for ecotoxicogenomics: Daphnia magna DNA microarray.
    Cell Biol Toxicol, 24(6): 641-7. [Abstract] [Full-text]
28. Finding common genes in multiple cancer types through meta-analysis of microarray experiments: a rank aggregation approach.
    Genomics, 92(6): 400-3. [Abstract] [Full-text]
29. Genetic profile of Egyptian hepatocellular-carcinoma associated with hepatitis C virus Genotype 4 by 15 K cDNA microarray: Preliminary study.
    BMC Res Notes, 1: 106. [Abstract] [Full-text]
30. A pathway-specific microarray analysis highlights the complex and co-ordinated transcriptional networks of the developing grain of field-grown barley.
    J Exp Bot. [Abstract] [Full-text]
31. Microarray analysis identifies candidate genes for key roles in coral development.
    BMC Genomics, 9(1): 540. [Abstract] [Full-text]
32. Development of a novel ozone- and photo-stable HyPer5 red fluorescent dye for array CGH and microarray gene expression analysis with consistent performance irrespective of environmental conditions.
    BMC Biotechnol, 8(1): 86. [Abstract] [Full-text]
33. A short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities.
    BMC Microbiol, 8(1): 195. [Abstract] [Full-text]
34. Brachyury, SOX-9, and podoplanin, new markers in the skull base chordoma vs chondrosarcoma differential: a tissue microarray-based comparative analysis.
    Mod Pathol, 21(12): 1461-9. [Abstract] [Full-text]
35. Electroporation microarray for parallel transfer of small interfering RNA into mammalian cells.
    Anal Bioanal Chem, 392(7): 1309-16. [Abstract] [Full-text]
36. Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources.
    BMC Genomics, 9: 495. [Abstract] [Full-text]
37. Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples.
    Pharmacogenomics, 9(11): 1753-63. [Abstract] [Full-text]
38. Microarray-based assay for the detection of genetic variations of structural genes of West Nile virus.
    J Virol Methods, 154(1): 27-40. [Abstract] [Full-text]
39. Gene set analyses for interpreting microarray experiments on prokaryotic organisms.
    BMC Bioinformatics, 9: 469. [Abstract] [Full-text]
40. Robust prognostic value of a knowledge-based proliferation signature across large patient microarray studies spanning different cancer types.
    Br J Cancer, 99(11): 1884-90. [Abstract] [Full-text]
41. EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management.
    BMC Bioinformatics, 9(1): 493. [Abstract] [Full-text]
42. A comparison of four clustering methods for brain expression microarray data.
    BMC Bioinformatics, 9(1): 490. [Abstract] [Full-text]
43. Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms.
    Nucleic Acids Res, 36(21): e141. [Abstract] [Full-text]
44. Gene expression profiling in chicken heterophils with Salmonella enteritidis stimulation using a chicken 44 K Agilent microarray.
    BMC Genomics, 9: 526. [Abstract] [Full-text]

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