Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 5 (2008), Issue 3 (March)

1. MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis.
   Genome Res, 18(3): 404-11. [Abstract] [Full-text]
2. A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data.
   J Theor Biol, 251(2): 264-74. [Abstract] [Full-text]
3. Microarray-based in vitro test system for the discrimination of contact allergens and irritants: identification of potential marker genes.
   Clin Chem, 54(3): 525-33. [Abstract] [Full-text]
4. Calculating confidence intervals for prediction error in microarray classification using resampling.
   Stat Appl Genet Mol Biol, 7: Article8. [Abstract] [Full-text]
5. Defining molecular classifications and targets in gastroenteropancreatic neuroendocrine tumors through DNA microarray analysis.
   Endocr Relat Cancer, 15(1): 243-56. [Abstract] [Full-text]
6. Using microarray analysis as a prognostic and predictive tool in oncology: focus on breast cancer and normal tissue toxicity.
   Semin Radiat Oncol, 18(2): 105-14. [Abstract] [Full-text]
7. A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray.
   BMC Genomics, 9: 59. [Abstract] [Full-text]
8. Extent and diversity of human alternative splicing established by complementary database annotation and microarray analysis.
   OMICS, 12(1): 83-92. [Abstract] [Full-text]
9. The Sterolgene v0 cDNA microarray: a systemic approach to studies of cholesterol homeostasis and drug metabolism.
   BMC Genomics, 9: 76. [Abstract] [Full-text]
10. Systematic identification of cell cycle regulated transcription factors from microarray time series data.
    BMC Genomics, 9(1): 116. [Abstract] [Full-text]
11. Development of a cross-disciplinary investigative model for the introduction of microarray techniques at non-r1 undergraduate institutions.
    CBE Life Sci Educ, 7(1): 118-31. [Abstract] [Full-text]
12. Identification of hepatocellular-carcinoma-associated antigens and autoantibodies by serological proteome analysis combined with protein microarray.
    J Proteome Res, 7(2): 611-20. [Abstract] [Full-text]
13. Characterization of a newly developed chicken 44K Agilent microarray.
    BMC Genomics, 9: 60. [Abstract] [Full-text]
14. A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes.
    BMC Genomics, 9: 53. [Abstract] [Full-text]
15. Microarray data mining using landmark gene-guided clustering.
    BMC Bioinformatics, 9: 92. [Abstract] [Full-text]
16. Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion.
    Proc Natl Acad Sci U S A, 105(9): 3640-5. [Abstract] [Full-text]
17. Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system.
    BMC Genomics, 9: 84. [Abstract] [Full-text]
18. Ranking analysis of F-atatistics for microarray data.
    BMC Bioinformatics, 9(1): 142. [Abstract] [Full-text]
19. DNA microarray based on arrayed-primer extension technique for identification of pathogenic fungi responsible for invasive and superficial mycoses.
    J Clin Microbiol, 46(3): 909-15. [Abstract] [Full-text]
20. Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis.
    BMC Plant Biol, 8: 11. [Abstract] [Full-text]
21. Novel microarray design strategy to study complex bacterial communities.
    Appl Environ Microbiol, 74(6): 1876-85. [Abstract] [Full-text]
22. BioLattice: a framework for the biological interpretation of microarray gene expression data using concept lattice analysis.
    J Biomed Inform, 41(2): 232-41. [Abstract] [Full-text]
23. Multiple gene methylation of nonsmall cell lung cancers evaluated with 3-dimensional microarray.
    Cancer, 112(6): 1325-36. [Abstract] [Full-text]
24. A novel DNA microarray design for accurate and straightforward identification of Escherichia coli safety and laboratory strains.
    Syst Appl Microbiol, 31(1): 50-61. [Abstract] [Full-text]
25. In vitro antioxidant and antigenotoxic potentials of myricetin-3-o-galactoside and myricetin-3-o-rhamnoside from Myrtus communis: Modulation of expression of genes involved in cell defence system using cDNA microarray.
    Toxicol In Vitro, 22(3): 567-81. [Abstract] [Full-text]
26. Detection of human papillomavirus genotypes with liquid bead microarray in cervical lesions of northern Chinese patients.
    Cancer Genet Cytogenet, 182(1): 12-7. [Abstract] [Full-text]
27. Development of a human mitochondrial oligonucleotide microarray (h-MitoArray) and gene expression analysis of fibroblast cell lines from 13 patients with isolated F1Fo ATP synthase deficiency.
    BMC Genomics, 9: 38. [Abstract] [Full-text]
28. Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus.
    Appl Microbiol Biotechnol, 78(4): 695-707. [Abstract] [Full-text]
29. Salmon louse (Lepeophtheirus salmonis) transcriptomes during post molting maturation and egg production, revealed using EST-sequencing and microarray analysis.
    BMC Genomics, 9(1): 126. [Abstract] [Full-text]
30. Can subtle changes in gene expression be consistently detected with different microarray platforms?
    BMC Genomics, 9(1): 124. [Abstract] [Full-text]
31. Whole-genome microarray and targeted analysis of angiogenesis-regulating gene expression (ENG, FLT1, VEGF, PlGF) in placentas from pre-eclamptic and small-for-gestational-age pregnancies.
    J Matern Fetal Neonatal Med, 21(4): 267-73. [Abstract] [Full-text]
32. Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules.
    Proteomics, 8(5): 968-79. [Abstract] [Full-text]
33. Investigation of self-organizing oscillator networks for use in clustering microarray data.
    IEEE Trans Nanobioscience, 7(1): 65-79. [Abstract] [Full-text]
34. Construction and evaluation of an automated light directed protein-detecting microarray synthesizer.
    IEEE Trans Nanobioscience, 7(1): 20-7. [Abstract] [Full-text]
35. Exon level integration of proteomics and microarray data.
    BMC Bioinformatics, 9: 118. [Abstract] [Full-text]
36. Consensus and Meta-analysis regulatory networks for combining multiple microarray gene expression datasets.
    J Biomed Inform. [Abstract] [Full-text]
37. Microarray analysis of bladder smooth muscle from patients with myelomeningocele.
    BJU Int. [Abstract] [Full-text]
38. Microarray technology applied to the complex disorder of preeclampsia.
    J Obstet Gynecol Neonatal Nurs, 37(2): 146-57. [Abstract] [Full-text]
39. Gene (mRNA) expression in canine atopic dermatitis: microarray analysis.
    Vet Dermatol, 19(2): 59-66. [Abstract] [Full-text]
40. Differential gene expression in cumulus cells as a prognostic indicator of embryo viability: a microarray analysis.
    Mol Hum Reprod, 14(3): 157-68. [Abstract] [Full-text]
41. Microarray-based Ms-SNuPE: Near-quantitative analysis for a high-throughput DNA methylation.
    Biosens Bioelectron, 23(9): 1333-9. [Abstract] [Full-text]
42. Gene expression of topoisomerase II alpha (TOP2A) by microarray analysis is highly prognostic in estrogen receptor (ER) positive breast cancer.
    Breast Cancer Res Treat. [Abstract] [Full-text]
43. A framework to identify physiological responses in microarray-based gene expression studies: selection and interpretation of biologically relevant genes.
    Physiol Genomics, 33(1): 78-90. [Abstract] [Full-text]
44. Chromosomal instability in gastric mucosa-associated lymphoid tissue lymphomas: a fluorescent in situ hybridization study using a tissue microarray approach.
    Hum Pathol, 39(4): 536-42. [Abstract] [Full-text]
45. Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG).
    Nucleic Acids Res, 36(5): e27. [Abstract] [Full-text]
46. Method for single-cell microarray analysis and application to gene-expression profiling of GABAergic neuron progenitors.
    Neurosci Res, 60(4): 439-51. [Abstract] [Full-text]
47. Cross-study validation and combined analysis of gene expression microarray data.
    Biostatistics, 9(2): 333-54. [Abstract] [Full-text]
48. Microarray analysis of MicroRNA expression in acute rejection after renal transplantation.
    Transpl Immunol, 19(1): 81-5. [Abstract] [Full-text]
49. Microarray analysis of the global alterations in the gene expression in the placentas from cigarette-smoking mothers.
    Clin Pharmacol Ther, 83(4): 542-50. [Abstract] [Full-text]
50. Two-dimensional microarray of HepG2 spheroids using collagen/polyethylene glycol micropatterned chip.
    J Mater Sci Mater Med, 19(5): 2071-7. [Abstract] [Full-text]
51. In silico approach to identify the expression of the undiscovered molecules from microarray public database: identification of odorant receptors expressed in non-olfactory tissues.
    Naunyn Schmiedebergs Arch Pharmacol, 377(2): 159-65. [Abstract] [Full-text]
52. Focused microarray analysis of peripheral mononuclear blood cells from churg-strauss syndrome patients.
    DNA Res, 15(2): 103-14. [Abstract] [Full-text]
53. A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species.
    Proc Natl Acad Sci U S A, 105(11): 4387-92. [Abstract] [Full-text]
54. Microarray analysis of Ewing's sarcoma family of tumours reveals characteristic gene expression signatures associated with metastasis and resistance to chemotherapy.
    Eur J Cancer, 44(5): 699-709. [Abstract] [Full-text]
55. Microarray gene expression profiling of mouse brain mRNA in a model of lithium treatment.
    Psychiatr Genet, 18(2): 64-72. [Abstract] [Full-text]
56. Home-built integrated microarray system (IMAS). A three-laser confocal fluorescence scanner coupled with a microarray printer.
    Anal Bioanal Chem, 390(6): 1563-73. [Abstract] [Full-text]
57. An oligonucleotide prokaryotic acidophile microarray: its validation and its use to monitor seasonal variations in extreme acidic environments with total environmental RNA.
    Environ Microbiol, 10(4): 836-50. [Abstract] [Full-text]
58. Prediction of prognosis in children with medulloblastoma by using immunohistochemical analysis and tissue microarray.
    J Neurosurg Pediatrics, 1(3): 196-205. [Abstract] [Full-text]
59. Development of a Brassica seed cDNA microarray.
    Genome, 51(3): 236-42. [Abstract] [Full-text]
60. Oligonucleotide Microarray Analysis of Genes Regulating Apoptosis in Chronically Ischemic and Postinfarction Myocardium.
    Biochem Genet. [Abstract] [Full-text]
61. Gene expression profiling with microarray and SAGE identifies PLUNC as a marker for hepatoid adenocarcinoma of the stomach.
    Mod Pathol, 21(4): 464-75. [Abstract] [Full-text]
62. Pathway analysis of microarray data via regression.
    J Comput Biol, 15(3): 269-77. [Abstract] [Full-text]
63. A genome-wide microarray analysis reveals anti-inflammatory target genes of paeonol in macrophages.
    Inflamm Res. [Abstract] [Full-text]
64. Effect of RNA quality on transcript intensity levels in microarray analysis of human post-mortem brain tissues.
    BMC Genomics, 9: 91. [Abstract] [Full-text]
65. Microarray analysis in sperm from fertile and infertile men without basic sperm analysis abnormalities reveals a significantly different transcriptome.
    Fertil Steril. [Abstract] [Full-text]
66. Simultaneously detection of genomic and expression alterations in prostate cancer using cDNA microarray.
    Prostate. [Abstract] [Full-text]
67. Profiling of differentially expressed genes in porcine epithelial cells derived from periodontal ligament and gingiva by DNA microarray.
    Arch Oral Biol, 53(5): 437-42. [Abstract] [Full-text]
68. Longitudinal microarray analysis of cell surface antigens on peripheral blood mononuclear cells from HIV+ individuals on highly active antiretroviral therapy.
    Retrovirology, 5: 24. [Abstract] [Full-text]
69. Investigating fixative-induced changes in RNA quality and utility by microarray analysis.
    Exp Mol Pathol, 84(2): 156-72. [Abstract] [Full-text]
70. Mistakes in validating the accuracy of a prediction classifier in high-dimensional butsmall-sample microarray data.
    Stat Methods Med Res. [Abstract] [Full-text]
71. A preliminary study on the feasibility of gene expression profile of rhesus monkey detected with human microarray.
    Transplant Proc, 40(2): 598-602. [Abstract] [Full-text]

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