Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 5 (2008), Issue 4 (April)

1. Orthotopic implantation mouse model and cDNA microarray analysis indicates several genes potentially involved in lymph node metastasis of colorectal cancer.
   Cancer Sci, 99(4): 711-9. [Abstract] [Full-text]
2. Translational microarray systems for outcome prediction of hepatocellular carcinoma.
   Cancer Sci, 99(4): 659-65. [Abstract] [Full-text]
3. Development of a compact optical system for microarray scanning using a DVD pickup head.
   Rev Sci Instrum, 79(3): 035101. [Abstract] [Full-text]
4. Immunosuppressive drug-free operational immune tolerance in human kidney transplants recipients. Part II. Non-statistical gene microarray analysis.
   J Cell Biochem, 103(6): 1693-706. [Abstract] [Full-text]
5. Expression of P53, P27 and KI-67 in colorectal cancer patients of various ethnic origins: Clinical and tissue microarray based analysis.
   J Surg Oncol, 97(5): 416-22. [Abstract] [Full-text]
6. RNA expression microarray analysis in mouse prospermatogonia: Identification of candidate epigenetic modifiers.
   Dev Dyn, 237(4): 1082-9. [Abstract] [Full-text]
7. Microarray analysis of striatal embryonic stem cells induced to differentiate by ensheathing cell conditioned media.
   Dev Dyn, 237(4): 979-94. [Abstract] [Full-text]
8. Chromosome 1 Analysis in Chromophobe Renal Cell Carcinomas With Tissue Microarray (TMA)-facilitated Fluorescence In Situ Hybridization (FISH) Demonstrates Loss of 1p/1 Which is Also Present in Renal Oncocytomas.
   Diagn Mol Pathol. [Abstract] [Full-text]
9. Correlation of Pap Smear, Cervical Biopsy, and Clinical Follow-up With an HPV Typing Microarray System.
   Diagn Mol Pathol. [Abstract] [Full-text]
10. Microarray Databases I.
    Pancreatology, 8(2): 101-102. [Abstract] [Full-text]
11. Microarray analysis refines classification of non-medullary thyroid tumours of uncertain malignancy.
    Oncogene, 27(15): 2228-36. [Abstract] [Full-text]
12. Proteomic, microarray, and signature-tagged mutagenesis analyses of anaerobic Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditions.
    J Bacteriol, 190(8): 2739-58. [Abstract] [Full-text]
13. A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.
    Nucleic Acids Res. [Abstract] [Full-text]
14. Correcting the estimated level of differential expression for gene selection bias: application to a microarray study.
    Stat Appl Genet Mol Biol, 7: Article10. [Abstract] [Full-text]
15. Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.
    Nucleic Acids Res, 36(6): 1770-82. [Abstract] [Full-text]
16. An antibody microarray, in multiwell plate format, for multiplex screening of foodborne pathogenic bacteria and biomolecules.
    Anal Bioanal Chem. [Abstract] [Full-text]
17. Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells.
    Can J Microbiol, 54(3): 189-200. [Abstract] [Full-text]
18. Comparison of reverse hybridization, microarray, and sequence analysis for genotyping hepatitis B virus.
    J Clin Microbiol, 46(4): 1268-73. [Abstract] [Full-text]
19. Segmentation of cDNA microarray images by kernel density estimation.
    J Biomed Inform. [Abstract] [Full-text]
20. Validation of tissue microarray technology in squamous cell carcinoma of the esophagus.
    Virchows Arch. [Abstract] [Full-text]
21. Microarray analysis of mdx mice expressing high levels of utrophin: Therapeutic implications for dystrophin deficiency.
    Neuromuscul Disord, 18(3): 239-47. [Abstract] [Full-text]
22. Gene expression profile analysis of primary glioblastomas and non-neoplastic brain tissue: identification of potential target genes by oligonucleotide microarray and real-time quantitative PCR.
    J Neurooncol. [Abstract] [Full-text]
23. A focused microarray to study human mitochondrial and nuclear gene expression.
    Biol Res Nurs, 9(4): 272-9. [Abstract] [Full-text]
24. Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments.
    Stat Med, 27(11): 1960-1972. [Abstract] [Full-text]
25. Fast Network Component Analysis (FastNCA) for gene regulatory network reconstruction from microarray data.
    Bioinformatics. [Abstract] [Full-text]
26. Microarray analysis of E9.5 reduced folate carrier (RFC1; Slc19a1) knockout embryos reveals altered expression of genes in the cubilin-megalin multiligand endocytic receptor complex.
    BMC Genomics, 9(1): 156. [Abstract] [Full-text]
27. Monochromosome Transfer and Microarray Analysis Identify a Critical Tumor-Suppressive Region Mapping to Chromosome 13q14 and THSD1 in Esophageal Carcinoma.
    Mol Cancer Res, 6(4): 592-603. [Abstract] [Full-text]
28. A high-throughput pipeline for designing microarray-based pathogen diagnostic assays.
    BMC Bioinformatics, 9(1): 185. [Abstract] [Full-text]
29. Identification of human metapneumovirus-induced gene networks in airway epithelial cells by microarray analysis.
    Virology, 374(1): 114-27. [Abstract] [Full-text]
30. A suite of Perl modules for handling microarray data.
    Bioinformatics, 24(8): 1102-3. [Abstract] [Full-text]
31. Mineralocorticoid Receptor and 11beta-Hydroxysteroid Dehydrogenase Type II Expression in Renal Cell Neoplasms: A Tissue Microarray and Quantitative RT-PCR Study.
    Am J Surg Pathol. [Abstract] [Full-text]
32. Follistatin antagonizes transforming growth factor-beta3-induced epithelial-mesenchymal transition in vitro: implications for murine palatal development supported by microarray analysis.
    Differentiation, 76(4): 404-16. [Abstract] [Full-text]
33. Microarray-based label-free detection of RNA using bispyrene-modified 2'-O-methyl oligoribonucleotide as capture and detection probe.
    Bioorg Med Chem Lett, 18(8): 2590-3. [Abstract] [Full-text]
34. The unique genomic properties of sex-biased genes: insights from avian microarray data.
    BMC Genomics, 9: 148. [Abstract] [Full-text]
35. Microarray-based detection of dye-labeled DNA by SERRS using particles formed by enzymatic silver deposition.
    Chemphyschem, 9(6): 867-72. [Abstract] [Full-text]
36. Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours.
    Br J Cancer, 98(8): 1403-1414. [Abstract] [Full-text]
37. Elucidating a normal function of huntingtin by functional and microarray analysis of huntingtin-null mouse embryonic fibroblasts.
    BMC Neurosci, 9(1): 38. [Abstract] [Full-text]
38. MPDA: Microarray pooled DNA analyzer.
    BMC Bioinformatics, 9(1): 196. [Abstract] [Full-text]
39. wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.
    Nucleic Acids Res, 36(7): e41. [Abstract] [Full-text]
40. Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction.
    Nucleic Acids Res, 36(7): 2395-405. [Abstract] [Full-text]
41. Genotyping of Chlamydophila psittaci using a new DNA microarray assay based on sequence analysis of ompA genes.
    BMC Microbiol, 8(1): 63. [Abstract] [Full-text]
42. Analytical approach for selecting normalizing genes from a cDNA microarray platform to be used in q-RT-PCR assays: A cnidarian case study.
    J Biochem Biophys Methods, 70(6): 985-91. [Abstract] [Full-text]
43. PCR-free mutation detection of BRCA1 on a zip-code microarray using ligase chain reaction.
    J Biochem Biophys Methods, 70(6): 897-902. [Abstract] [Full-text]
44. Importance of probe location for quantitative comparison of signal intensities among genes in microarray analysis.
    J Biochem Biophys Methods, 70(6): 926-31. [Abstract] [Full-text]
45. Development and application of an oligonucleotide microarray and real-time quantitative PCR for detection of wastewater bacterial pathogens.
    Sci Total Environ. [Abstract] [Full-text]
46. Missing value imputation improves clustering and interpretation of gene expression microarray data.
    BMC Bioinformatics, 9(1): 202. [Abstract] [Full-text]
47. Microarray-based detection of Korean-specific BRCA1 mutations.
    Anal Bioanal Chem, 391(1): 405-13. [Abstract] [Full-text]
48. Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana.
    RNA, 14(5): 836-43. [Abstract] [Full-text]
49. DNA microarray mediated transcriptional profiling of Nitrosomonas europaea in response to linear alkylbenzene sulfonates.
    FEMS Microbiol Lett, 282(2): 166-73. [Abstract] [Full-text]
50. Significance analysis of microarray for relative quantitation of LC/MS data in proteomics.
    BMC Bioinformatics, 9: 187. [Abstract] [Full-text]
51. The T7-primer is a source of experimental bias and introduces variability between microarray platforms.
    PLoS ONE, 3(4): e1980. [Abstract] [Full-text]
52. Application of microarray outlier detection methodology to psychiatric research.
    BMC Psychiatry, 8(1): 29. [Abstract] [Full-text]
53. Identification of a novel coronavirus from a beluga whale by using a panviral microarray.
    J Virol, 82(10): 5084-8. [Abstract] [Full-text]
54. Cytokeratin expression in hematological neoplasms: A tissue microarray study on 866 lymphoma and leukemia cases.
    Pathol Res Pract. [Abstract] [Full-text]
55. B-cell non-Hodgkin lymphomas in Uganda: an immunohistochemical appraisal on tissue microarray.
    Hum Pathol. [Abstract] [Full-text]
56. Molecular Characterization of Neisseria meningitidis Isolates Using a Resequencing DNA Microarray.
    J Mol Diagn, 10(3): 265-71. [Abstract] [Full-text]
57. Unequal group variances in microarray data analyses.
    Bioinformatics, 24(9): 1168-74. [Abstract] [Full-text]
58. Application of DNA microarray technology to influenza A/Vietnam/1194/2004 (H5N1) vaccine safety evaluation.
    Vaccine, 26(18): 2270-83. [Abstract] [Full-text]
59. Importance of the interferon-alpha system in murine large intestine indicated by microarray analysis of commensal bacteria-induced immunological changes.
    BMC Genomics, 9(1): 192. [Abstract] [Full-text]
60. M-BISON: microarray-based integration of data sources using networks.
    BMC Bioinformatics, 9(1): 214. [Abstract] [Full-text]
61. Identification of the molecular response of articular cartilage to injury, by microarray screening: Wnt-16 expression and signaling after injury and in osteoarthritis.
    Arthritis Rheum, 58(5): 1410-1421. [Abstract] [Full-text]
62. Evaluation of the Premi(R)Test Salmonella, a commercial low-density DNA microarray system intended for routine identification and typing of Salmonella enterica.
    Int J Food Microbiol, 123(3): 293-8. [Abstract] [Full-text]
63. CoPub: a literature-based keyword enrichment tool for microarray data analysis.
    Nucleic Acids Res. [Abstract] [Full-text]
64. A software framework for microarray and gene expression object model (MAGE-OM) array design annotation.
    BMC Genomics, 9: 133. [Abstract] [Full-text]
65. Screening Autoantibody Profiles in Systemic Rheumatic Disease with a Diagnostic Protein Microarray That Uses a Filtration-Assisted Nanodot Array Luminometric Immunoassay (NALIA).
    Clin Chem, 54(5): 883-90. [Abstract] [Full-text]
66. Normalization for triple-target microarray experiments.
    BMC Bioinformatics, 9(1): 216. [Abstract] [Full-text]
67. Heterologous microarray experiments allow the identification of the early events associated with potato tuber cold sweetening.
    BMC Genomics, 9: 176. [Abstract] [Full-text]
68. Microarray analysis of transcriptional responses to infection by herpes simplex virus types 1 and 2 and their US3-deficient mutants.
    Microbes Infect, 10(4): 405-413. [Abstract] [Full-text]

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