Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 5 (2008), Issue 6 (June)

1. Microarray analysis in rat liver slices correctly predicts in vivo hepatotoxicity.
   Toxicol Appl Pharmacol, 229(3): 300-9. [Abstract] [Full-text]
2. Development of a magnetic bead microarray for simultaneous and simple detection of four pestiviruses.
   J Virol Methods. [Abstract] [Full-text]
3. Identification of N-glycan of alpha-fetoprotein by lectin affinity microarray.
   J Cancer Res Clin Oncol, 134(8): 851-860. [Abstract] [Full-text]
4. Gene expression patterns during the larval development of European sea bass (dicentrarchus labrax) by microarray analysis.
   Mar Biotechnol (NY), 10(4): 416-28. [Abstract] [Full-text]
5. Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness.
   ISME J, 2(6): 642-55. [Abstract] [Full-text]
6. Correlation of Pap smear, cervical biopsy, and clinical follow-up with an HPV typing microarray system.
   Diagn Mol Pathol, 17(2): 107-11. [Abstract] [Full-text]
7. Mineralocorticoid receptor and 11beta-hydroxysteroid dehydrogenase type II expression in renal cell neoplasms: a tissue microarray and quantitative RT-PCR study.
   Am J Surg Pathol, 32(6): 874-83. [Abstract] [Full-text]
8. Estrogen receptor co-activator (AIB1) protein expression by automated quantitative analysis (AQUA) in a breast cancer tissue microarray and association with patient outcome.
   Breast Cancer Res Treat. [Abstract] [Full-text]
9. Concentration-dependent effects of genistein on global gene expression in MCF-7 breast cancer cells: an oligo microarray study.
   Breast Cancer Res Treat, 110(1): 85-98. [Abstract] [Full-text]
10. Development of a DNA microarray for authentication of ginseng drugs based on 18S rRNA gene sequence.
    J Agric Food Chem, 56(11): 3953-9. [Abstract] [Full-text]
11. Tissue microarray analysis reveals strong clinical evidence for a close association between loss of annexin A1 expression and nodal metastasis in gastric cancer.
    Clin Exp Metastasis. [Abstract] [Full-text]
12. B-cell non-Hodgkin lymphomas in Uganda: an immunohistochemical appraisal on tissue microarray.
    Hum Pathol, 39(6): 817-23. [Abstract] [Full-text]
13. Gel-based oligonucleotide microarray approach to analyze protein-ssDNA binding specificity.
    Nucleic Acids Res, 36(10): e61. [Abstract] [Full-text]
14. Microarray-based global mapping of integration sites for the retrotransposon, intracisternal A-particle, in the mouse genome.
    Nucleic Acids Res, 36(10): e59. [Abstract] [Full-text]
15. A visual analytics approach for understanding biclustering results from microarray data.
    BMC Bioinformatics, 9: 247. [Abstract] [Full-text]
16. Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms.
    Genes Chromosomes Cancer, 47(8): 697-711. [Abstract] [Full-text]
17. On Gene Ranking Using Replicated Microarray Time Course Data.
    Biometrics. [Abstract] [Full-text]
18. PATIKAmad: putting microarray data into pathway context.
    Proteomics, 8(11): 2196-8. [Abstract] [Full-text]
19. Identification of novel PPARgamma target genes by integrated analysis of ChIP-on-chip and microarray expression data during adipocyte differentiation.
    Biochem Biophys Res Commun, 372(2): 362-6. [Abstract] [Full-text]
20. Automatic microarray spot segmentation using a Snake-Fisher model.
    IEEE Trans Med Imaging, 27(6): 847-57. [Abstract] [Full-text]
21. An original genetic approach to the fully automatic gridding of microarray images.
    IEEE Trans Med Imaging, 27(6): 805-13. [Abstract] [Full-text]
22. Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.
    Bioelectrochemistry, 73(1): 70-5. [Abstract] [Full-text]
23. Detection of pancreatic cancer using antibody microarray-based serum protein profiling.
    Proteomics, 8(11): 2211-9. [Abstract] [Full-text]
24. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
    BMC Bioinformatics, 9: S18. [Abstract] [Full-text]
25. Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists.
    BMC Bioinformatics, 9: S14. [Abstract] [Full-text]
26. Metagenome microarray for screening of fosmid clones containing specific genes.
    FEMS Microbiol Lett, 284(1): 28-34. [Abstract] [Full-text]
27. Microarray mRNA expression analysis of Fanconi anemia fibroblasts.
    Cytogenet Genome Res, 121(1): 10-3. [Abstract] [Full-text]
28. Label-free and dynamic detection of biomolecular interactions for high-throughput microarray applications.
    Proc Natl Acad Sci U S A, 105(23): 7988-92. [Abstract] [Full-text]
29. Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data.
    BMC Genomics, 9: 269. [Abstract] [Full-text]
30. Development of an oligonucleotide microarray to detect di- and monooxygenase genes for benzene degradation in soil.
    FEMS Microbiol Lett. [Abstract] [Full-text]
31. Generation of a non-small cell lung cancer transcriptome microarray.
    BMC Med Genomics, 1: 20. [Abstract] [Full-text]
32. Relevance of using a human microarray to study gene expression in heaves-affected horses.
    Vet J, 177(2): 216-21. [Abstract] [Full-text]
33. Estimating gene signals from noisy microarray images.
    IEEE Trans Nanobioscience, 7(2): 142-53. [Abstract] [Full-text]
34. Universal Reference RNA is Not a Representative Normal Sample for Oligonucleotide Microarray Studies.
    Pathol Oncol Res. [Abstract] [Full-text]
35. Preliminary Study of the Expression of Genes Connected with the Orexigenic and Anorexigenic System Using Microarray Technique in Anorexia Nervosa.
    Neuropsychobiology, 57(3): 116-120. [Abstract] [Full-text]
36. Correlates and determinants of nuclear epidermal growth factor receptor content in an oropharyngeal cancer tissue microarray.
    Cancer Epidemiol Biomarkers Prev, 17(6): 1486-92. [Abstract] [Full-text]
37. Application of carbohydrate microarray technology for the detection of Burkholderia pseudomallei, Bacillus anthracis and Francisella tularensis antibodies.
    Carbohydr Res. [Abstract] [Full-text]
38. ROC analysis with multiple classes and multiple tests: methodology and its application in microarray studies.
    Biostatistics, 9(3): 566-76. [Abstract] [Full-text]
39. An ultrasensitive new DNA microarray chip provides gene expression profiles for preoperative esophageal cancer biopsies without RNA amplification.
    Oncology, 73(5): 366-75. [Abstract] [Full-text]
40. Gene profiling for determining pluripotent genes in a time course microarray experiment.
    Biostatistics. [Abstract] [Full-text]
41. A microarray chip for label-free detection of narcotics.
    Anal Bioanal Chem, 391(5): 1679-88. [Abstract] [Full-text]
42. Missing value imputation for microarray gene expression data using histone acetylation information.
    BMC Bioinformatics, 9: 252. [Abstract] [Full-text]
43. Reverse transcription-polymerase chain reaction on a microarray: the integrating concept of "active arrays".
    Anal Bioanal Chem, 391(5): 1671-8. [Abstract] [Full-text]
44. Enhanced detection of clinically relevant genomic imbalances using a targeted plus whole genome oligonucleotide microarray.
    Genet Med, 10(6): 415-29. [Abstract] [Full-text]
45. Finding common genes in multiple cancer types through meta-analysis of microarray experiments: A rank aggregation approach.
    Genomics. [Abstract] [Full-text]
46. Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes.
    Int J Cancer, 123(4): 817-25. [Abstract] [Full-text]
47. Finding edging genes from microarray data.
    J Biotechnol, 135(3): 233-40. [Abstract] [Full-text]
48. Genome profiling of ovarian adenocarcinomas using pangenomic BACs microarray comparative genomic hybridization.
    Mol Cytogenet, 1(1): 10. [Abstract] [Full-text]
49. Microarray-based DNA profiling to study genomic aberrations.
    IUBMB Life, 60(7): 437-40. [Abstract] [Full-text]
50. Assessment of muscarinic and nicotinic acetylcholine receptor expression in primitive neuroectodermal tumor/ewing family of tumor and desmoplastic small round cell tumor: an immunohistochemical and Western blot study of tissue microarray and cell lines.
    Fetal Pediatr Pathol, 27(2): 83-97. [Abstract] [Full-text]
51. CYR61 is a novel gene associated with temperature-dependent changes in fish metabolism as revealed by cDNA microarray analysis on a medaka Oryzias latipes cell line.
    J Cell Biochem, 104(4): 1297-310. [Abstract] [Full-text]
52. Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data.
    BMC Bioinformatics, 9: 267. [Abstract] [Full-text]
53. The genome of Streptomyces rimosus subsp. rimosus shows a novel structure compared to other Streptomyces using DNA/DNA microarray analysis.
    Antonie Van Leeuwenhoek, 94(2): 173-86. [Abstract] [Full-text]
54. Induction of the endoplasmic reticulum stress protein GADD153/CHOP by capsaicin in prostate PC-3 cells: a microarray study.
    Biochem Biophys Res Commun, 372(4): 785-91. [Abstract] [Full-text]
55. Chronic hypoxia and rat lung development: analysis by morphometry and directed microarray.
    Pediatr Res, 64(1): 56-62. [Abstract] [Full-text]
56. Validation of a targeted DNA microarray for the clinical evaluation of recurrent abnormalities in chronic lymphocytic leukemia.
    Am J Hematol, 83(7): 540-6. [Abstract] [Full-text]
57. CoPub: a literature-based keyword enrichment tool for microarray data analysis.
    Nucleic Acids Res, 36: W406-10. [Abstract] [Full-text]
58. AMIC@: All MIcroarray Clusterings @ once.
    Nucleic Acids Res, 36: W315-9. [Abstract] [Full-text]
59. lumi: a pipeline for processing Illumina microarray.
    Bioinformatics, 24(13): 1547-8. [Abstract] [Full-text]
60. Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
    Nucleic Acids Res, 36: W327-31. [Abstract] [Full-text]
61. GEPAS, a web-based tool for microarray data analysis and interpretation.
    Nucleic Acids Res, 36: W308-14. [Abstract] [Full-text]
62. Assignment of Staphylococcus aureus isolates to clonal complexes based on microarray analysis and pattern recognition.
    FEMS Immunol Med Microbiol, 53(2): 237-51. [Abstract] [Full-text]
63. MADNet: microarray database network web server.
    Nucleic Acids Res, 36: W332-5. [Abstract] [Full-text]
64. Nucleosome positioning from tiling microarray data.
    Bioinformatics, 24(13): i139-46. [Abstract] [Full-text]
65. Double feature selection and cluster analyses in mining of microarray data from cotton.
    BMC Genomics, 9: 295. [Abstract] [Full-text]
66. Stability of gene contributions and identification of outliers in multivariate analysis of microarray data.
    BMC Bioinformatics, 9: 289. [Abstract] [Full-text]

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