Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 5 (2008), Issue 7 (July)

1. Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins.
   BMC Genomics, 9: 278. [Abstract] [Full-text]
2. Microarray data mining: a novel optimization-based approach to uncover biologically coherent structures.
   BMC Bioinformatics, 9: 268. [Abstract] [Full-text]
3. Methods for evaluating gene expression from Affymetrix microarray datasets.
   BMC Bioinformatics, 9: 284. [Abstract] [Full-text]
4. Microarray technology and applications in the arena of genome-wide association.
   Clin Chem, 54(7): 1116-24. [Abstract] [Full-text]
5. Serological microarray for a paradoxical diagnostic of Whipple's disease.
   Eur J Clin Microbiol Infect Dis. [Abstract] [Full-text]
6. Prognostic effect of basal-like breast cancers is time dependent: evidence from tissue microarray studies on a lymph node-negative cohort.
   Clin Cancer Res, 14(13): 4168-74. [Abstract] [Full-text]
7. Microarray expression analysis reveals genetic pathways implicated in C621 synphilin-1-mediated toxicity.
   J Neural Transm, 115(7): 941-58. [Abstract] [Full-text]
8. Antibody Microarray Analyses of Signal Transduction Protein Expression and Phosphorylation during Porcine Oocyte Maturation.
   J Proteome Res, 7(7): 2860-71. [Abstract] [Full-text]
9. Genotyping of Bacillus cereus strains by microarray-based resequencing.
   PLoS ONE, 3(7): e2513. [Abstract] [Full-text]
10. Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera.
    Antonie Van Leeuwenhoek. [Abstract] [Full-text]
11. Expression profiling of a high-fertility mouse line by microarray analysis and qPCR.
    BMC Genomics, 9: 307. [Abstract] [Full-text]
12. Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification.
    BMC Bioinformatics, 9: 280. [Abstract] [Full-text]
13. Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarray.
    Microbiology, 154: 1949-59. [Abstract] [Full-text]
14. An efficient method to identify differentially expressed genes in microarray experiments.
    Bioinformatics, 24(14): 1583-9. [Abstract] [Full-text]
15. Immune Dysregulation and Tumor-Associated Gene Changes in Recurrent Respiratory Papillomatosis: A Paired Microarray Analysis1.
    Mol Med. [Abstract] [Full-text]
16. Development of a biosensor microarray towards food screening, using imaging surface plasmon resonance.
    Biosens Bioelectron. [Abstract] [Full-text]
17. TRARESA: a tissue microarray-based hospital system for biomarker validation and discovery.
    Pathology, 40(5): 441-9. [Abstract] [Full-text]
18. Automated quantitative analysis of estrogen receptor expression in breast carcinoma does not differ from expert pathologist scoring: a tissue microarray study of 3,484 cases.
    Breast Cancer Res Treat, 110(3): 417-26. [Abstract] [Full-text]
19. Potential effects of perfluorinated compounds in common cormorants from Lake Biwa, Japan: An implication from the hepatic gene expression profiles by microarray.
    Environ Toxicol Chem. [Abstract] [Full-text]
20. Phylogenetic backgrounds and virulence profiles of atypical enteropathogenic Escherichia coli strains from a case-control study using multilocus sequence typing and DNA microarray analysis.
    J Clin Microbiol, 46(7): 2280-90. [Abstract] [Full-text]
21. Multiplex PCR and oligonucleotide microarray for detection of single-nucleotide polymorphisms associated with Plasmodium falciparum drug resistance.
    J Clin Microbiol, 46(7): 2167-74. [Abstract] [Full-text]
22. Evaluation of automated and conventional microarray hybridization: a question of data quality and best practice?
    Biotechnol Appl Biochem, 50: 181-90. [Abstract] [Full-text]
23. Reducing microarray data via nonnegative matrix factorization for visualization and clustering analysis.
    J Biomed Inform, 41(4): 602-6. [Abstract] [Full-text]
24. The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data.
    J Biomed Inform, 41(4): 530-43. [Abstract] [Full-text]
25. Creation of a digital slide and tissue microarray resource from a multi-institutional predictive toxicology study in the rat: an initial report from the PredTox group.
    Exp Toxicol Pathol, 60(4): 235-45. [Abstract] [Full-text]
26. Microarray-based characterization of microbial community functional structure and heterogeneity in marine sediments from the Gulf of Mexico.
    Appl Environ Microbiol, 74(14): 4516-29. [Abstract] [Full-text]
27. Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.
    BMC Bioinformatics, 9: 291. [Abstract] [Full-text]
28. Quantitative analysis of DNA hybridization in a flowthrough microarray for molecular testing.
    Anal Biochem, 380(1): 84-90. [Abstract] [Full-text]
29. Validation of microarray-based resequencing of 93 worldwide mitochondrial genomes.
    Hum Mutat. [Abstract] [Full-text]
30. Microarray-based detection of viruses causing vesicular or vesicular-like lesions in livestock animals.
    Vet Microbiol. [Abstract] [Full-text]
31. Is immunohistochemical epidermal growth factor receptor expression overestimated as a prognostic factor in head-neck squamous cell carcinoma? A retrospective analysis based on a tissue microarray of 365 carcinomas.
    Hum Pathol. [Abstract] [Full-text]
32. SEGS: search for enriched gene sets in microarray data.
    J Biomed Inform, 41(4): 588-601. [Abstract] [Full-text]
33. Differential and correlation analyses of microarray gene expression data in the CEPH Utah families.
    Genomics, 92(2): 94-100. [Abstract] [Full-text]
34. Comparison of normalization methods with microRNA microarray.
    Genomics, 92(2): 122-8. [Abstract] [Full-text]
35. A weighted average difference method for detecting differentially expressed genes from microarray data.
    Algorithms Mol Biol, 3: 8. [Abstract] [Full-text]
36. Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.
    BMC Genomics, 9: 302. [Abstract] [Full-text]
37. A comparative study of genome-wide SNP, CGH microarray and protein expression analysis to explore genotypic and phenotypic mechanisms of acquired antiestrogen resistance in breast cancer.
    Breast Cancer Res Treat, 111(1): 55-63. [Abstract] [Full-text]
38. A meta-analysis of microarray gene expression in mouse stem cells: redefining stemness.
    PLoS ONE, 3(7): e2712. [Abstract] [Full-text]
39. Microarray analysis identifies a common set of cellular genes modulated by different HCV replicon clones.
    BMC Genomics, 9: 309. [Abstract] [Full-text]
40. A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes.
    BMC Microbiol, 8: 99. [Abstract] [Full-text]
41. Apparently low reproducibility of true differential expression discoveries in microarray studies.
    Bioinformatics. [Abstract] [Full-text]
42. Novel DNA Microarray System for Analysis of Nascent mRNAs.
    DNA Res. [Abstract] [Full-text]
43. Short time-series microarray analysis: methods and challenges.
    BMC Syst Biol, 2: 58. [Abstract] [Full-text]
44. Seeded Bayesian Networks: constructing genetic networks from microarray data.
    BMC Syst Biol, 2: 57. [Abstract] [Full-text]
45. A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data.
    BMC Bioinformatics, 9: 300. [Abstract] [Full-text]
46. A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?
    Bioinformatics. [Abstract] [Full-text]
47. Microarray for molecular typing of Salmonella enterica serovars.
    Mol Cell Probes, 22(4): 238-43. [Abstract] [Full-text]
48. Transcriptional profiling of phenotypically different Epo-Fc expressing CHO clones by cross-species microarray analysis.
    Biotechnol J, 3(7): 924-37. [Abstract] [Full-text]
49. Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value.
    Bioinformatics, 24(15): 1698-706. [Abstract] [Full-text]
50. Use of microarray technology to profile gene expression patterns important for reproduction in cattle.
    Reprod Domest Anim, 43: 359-67. [Abstract] [Full-text]
51. DNA Microarray Analysis of the Effect on Inflammation in Patients Treated with Acupuncture for Allergic Rhinitis.
    J Altern Complement Med. [Abstract] [Full-text]
52. Construction and application of an avian intestinal intraepithelial lymphocyte cDNA microarray (AVIELA) for gene expression profiling during Eimeria maxima infection.
    Vet Immunol Immunopathol, 124(3): 341-54. [Abstract] [Full-text]
53. Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments.
    Nucleic Acids Res, 36(13): 4417-23. [Abstract] [Full-text]
54. Identification of a molecular marker for type A spermatogonia by microarray analysis using gonadal cells from pvasa-GFP transgenic rainbow trout (Oncorhynchus mykiss).
    Mol Reprod Dev. [Abstract] [Full-text]
55. Microarray methods for protein biomarker detection.
    Analyst, 133(8): 975-83. [Abstract] [Full-text]
56. Glycoconjugate microarray based on an evanescent-field fluorescence-assisted detection principle for investigation of glycan-binding proteins.
    Glycobiology. [Abstract] [Full-text]
57. No evidence of chromosome damage in children and adolescents with differentiated thyroid carcinoma after receiving (131)I radiometabolic therapy, as evaluated by micronucleus assay and microarray analysis.
    Eur J Nucl Med Mol Imaging. [Abstract] [Full-text]
58. Altered metabolism of growth hormone receptor mutant mice: a combined NMR metabonomics and microarray study.
    PLoS ONE, 3(7): e2764. [Abstract] [Full-text]
59. Technique of Surface Modification of a Cell-Adhesion-Resistant Hydrogel by a Cell-Adhesion-Available Inorganic Microarray.
    Biomacromolecules. [Abstract] [Full-text]
60. Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments.
    J Comput Biol. [Abstract] [Full-text]
61. MAID : an effect size based model for microarray data integration across laboratories and platforms.
    BMC Bioinformatics, 9: 305. [Abstract] [Full-text]
62. A genome-wide 20 K citrus microarray for gene expression analysis.
    BMC Genomics, 9: 318. [Abstract] [Full-text]
63. Low podoplanin expression of tumor cells predicts poor prognosis in pathological stage IB squamous cell carcinoma of the lung, tissue microarray analysis of 136 patients using 24 antibodies.
    Lung Cancer. [Abstract] [Full-text]
64. Microarray comparative genomic hybridization analysis of tubular breast carcinoma shows recurrent loss of the CDH13 locus on 16q.
    Hum Pathol. [Abstract] [Full-text]
65. Simultaneous detection of six human diarrheal pathogens by using DNA microarray combined with tyramide signal amplification.
    J Microbiol Methods. [Abstract] [Full-text]
66. Between-groups within-gene heterogeneity of residual variances in microarray gene expression data.
    BMC Genomics, 9: 319. [Abstract] [Full-text]
67. Two-dimensional immune profiles improve antigen microarray-based characterization of humoral immunity.
    Proteomics, 8(14): 2840-8. [Abstract] [Full-text]
68. Potato, solanum tuberosum, defense against colorado potato beetle, leptinotarsa decemlineata (say): microarray gene expression profiling of potato by colorado potato beetle regurgitant treatment of wounded leaves.
    J Chem Ecol, 34(8): 1013-25. [Abstract] [Full-text]
69. High-risk human papillomavirus infections in breast cancer in Syrian women and their association with Id-1 expression: a tissue microarray study.
    Br J Cancer, 99(3): 404-7. [Abstract] [Full-text]
70. Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study.
    BMC Genomics, 9: 328. [Abstract] [Full-text]
71. Meta-analysis of nasopharyngeal carcinoma microarray data explores mechanism of EBV-regulated neoplastic transformation.
    BMC Genomics, 9: 322. [Abstract] [Full-text]
72. Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum.
    Microbiology, 154: 2387-96. [Abstract] [Full-text]
73. A fast Bayesian change point analysis for the segmentation of microarray data.
    Bioinformatics. [Abstract] [Full-text]
74. SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.
    BMC Bioinformatics, 9: 313. [Abstract] [Full-text]

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