Microarrays Research Today is a free monthly online journal that collates and summarizes the latest research about Microarrays, including details on experiments, designs, statistics, analysis, software.

Volume 6 (2009), Issue 2 (February)

1. Immunohistochemical prognostic markers in diffuse large B-cell lymphoma: validation of tissue microarray as a prerequisite for broad clinical applications (a study from the Lunenburg Lymphoma Biomarker Consortium).
   J Clin Pathol, 62(2): 128-38. [Abstract] [Full-text]
2. Detection of cryptic pathogenic copy number variations and constitutional loss of heterozygosity using high resolution SNP microarray analysis in 117 patients referred for cytogenetic analysis and impact on clinical practice.
   J Med Genet, 46(2): 123-31. [Abstract] [Full-text]
3. A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis.
   Mol Cancer, 8: 5. [Abstract] [Full-text]
4. SNPs detection by a single-strand specific nuclease on a PNA zip-code microarray.
   Biosens Bioelectron, 24(6): 1706-11. [Abstract] [Full-text]
5. Protein microarray analysis identifies human cellular prion protein interactors.
   Neuropathol Appl Neurobiol, 35(1): 16-35. [Abstract] [Full-text]
6. Lossless compression of microarray images using image-dependent finite-context models.
   IEEE Trans Med Imaging, 28(2): 194-201. [Abstract] [Full-text]
7. In vitro-targeted gene identification in patients with hepatitis C using a genome-wide microarray technology.
   Hepatology, 49(2): 378-86. [Abstract] [Full-text]
8. Design and validation of a microarray for detection, hemagglutinin subtyping, and pathotyping of avian influenza viruses.
   J Clin Microbiol, 47(2): 327-34. [Abstract] [Full-text]
9. Multiplex assay for simultaneously typing and subtyping influenza viruses by use of an electronic microarray.
   J Clin Microbiol, 47(2): 390-6. [Abstract] [Full-text]
10. Microarray Analysis of High Dose Recombinant Erythropoietin Treatment of Unilateral Brain Injury in Neonatal Mouse Hippocampus.
    Pediatr Res. [Abstract] [Full-text]
11. Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients.
    Mol Hum Reprod, 15(2): 89-103. [Abstract] [Full-text]
12. Diffuse large B-cell lymphoma with coexpression of CD3 in a pediatric patient: a case report, review of the literature, and tissue microarray study.
    J Pediatr Hematol Oncol, 31(2): 124-7. [Abstract] [Full-text]
13. Reverse engineering molecular regulatory networks from microarray data with qp-graphs.
    J Comput Biol, 16(2): 213-27. [Abstract] [Full-text]
14. Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA).
    Blood, 113(6): 1294-303. [Abstract] [Full-text]
15. Low podoplanin expression of tumor cells predicts poor prognosis in pathological stage IB squamous cell carcinoma of the lung, tissue microarray analysis of 136 patients using 24 antibodies.
    Lung Cancer, 63(3): 418-24. [Abstract] [Full-text]
16. Exploring transcriptional conservation between Ancylostoma caninum and Haemonchus contortus by oligonucleotide microarray and bioinformatic analyses.
    Mol Cell Probes, 23(1): 1-9. [Abstract] [Full-text]
17. Protein Microarray Analysis in Patients With Asthma: Elevation of the Chemokine PARC/CCL18 in Sputum.
    Chest, 135(2): 295-302. [Abstract] [Full-text]
18. Loss of Plexin B1 is highly prognostic in low proliferating ER positive breast cancers--results of a large scale microarray analysis.
    Eur J Cancer, 45(3): 405-13. [Abstract] [Full-text]
19. Enhancement of Aptamer Microarray Sensitivity through Spacer Optimization and Avidity Effect.
    Anal Chem. [Abstract] [Full-text]
20. DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.
    BMC Bioinformatics, 10: 37. [Abstract] [Full-text]
21. Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
    Microbiology, 155: 359-72. [Abstract] [Full-text]
22. Outcome prediction based on microarray analysis: a critical perspective on methods.
    BMC Bioinformatics, 10(1): 53. [Abstract] [Full-text]
23. Microarray study reveals that HIV-1 induces rapid type-I interferon-dependent p53 mRNA up-regulation in human primary CD4+ T cells.
    Retrovirology, 6: 5. [Abstract] [Full-text]
24. Microarray analyses of gene expression during the Tetrahymena thermophila life cycle.
    PLoS ONE, 4(2): e4429. [Abstract] [Full-text]
25. Nonspecific Hybridization Scaling of Microarray Expression Estimates: A Physicochemical Approach for Chip-to-Chip Normalization.
    J Phys Chem B. [Abstract] [Full-text]
26. Microarray analysis sheds light on the dedifferentiating role of agouti signal protein in murine melanocytes via the Mc1r.
    Proc Natl Acad Sci U S A, 106(6): 1802-7. [Abstract] [Full-text]
27. Microarray comparison of prostate tumor gene expression in African-American and Caucasian American males: a pilot project study.
    Infect Agent Cancer, 4: S3. [Abstract] [Full-text]
28. Evaluation of a gene information summarization system by users during the analysis process of microarray datasets.
    BMC Bioinformatics, 10: S5. [Abstract] [Full-text]
29. Predicting microRNA targets in time-series microarray experiments via functional data analysis.
    BMC Bioinformatics, 10: S32. [Abstract] [Full-text]
30. Integrative disease classification based on cross-platform microarray data.
    BMC Bioinformatics, 10: S25. [Abstract] [Full-text]
31. A statistical framework for integrating two microarray data sets in differential expression analysis.
    BMC Bioinformatics, 10: S23. [Abstract] [Full-text]
32. Network-based support vector machine for classification of microarray samples.
    BMC Bioinformatics, 10: S21. [Abstract] [Full-text]
33. Selecting control genes for RT-QPCR using public microarray data.
    BMC Bioinformatics, 10: 42. [Abstract] [Full-text]
34. Detection of gene expression in an individual cell type within a cell mixture using microarray analysis.
    PLoS ONE, 4(2): e4427. [Abstract] [Full-text]
35. Microarray expression analysis of human dopaminergic neuroblastoma cells after RNA interference of SNCA--a key player in the pathogenesis of Parkinson's disease.
    Brain Res, 1256: 19-33. [Abstract] [Full-text]
36. Genome-based expression profiles as a single standardized microarray platform for the diagnosis of bladder pain syndrome/interstitial cystitis: an array of 139 genes model.
    Int Urogynecol J Pelvic Floor Dysfunct. [Abstract] [Full-text]
37. Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection.
    PLoS ONE, 4(2): e4495. [Abstract] [Full-text]
38. Gene content differences across strains of Streptococcus uberis identified using oligonucleotide microarray comparative genomic hybridization.
    Infect Genet Evol, 9(2): 179-88. [Abstract] [Full-text]
39. Early gene expression analyzed by a genome microarray and real-time PCR in osteoblasts cultured with a 4-META/MMA-TBB adhesive resin sealer.
    Oral Surg Oral Med Oral Pathol Oral Radiol Endod, 107(3): e77-81. [Abstract] [Full-text]
40. BioCichlid: central dogma-based 3D visualization system of time-course microarray data on a hierarchical biological network.
    Bioinformatics, 25(4): 543-4. [Abstract] [Full-text]
41. Analysis of independent microarray datasets of renal biopsies identifies a robust transcript signature of acute allograft rejection.
    Transpl Int, 22(3): 293-302. [Abstract] [Full-text]
42. Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells.
    DNA Res, 16(1): 45-58. [Abstract] [Full-text]
43. Environmental microarray analyses of Antarctic soil microbial communities.
    ISME J, 3(3): 340-51. [Abstract] [Full-text]
44. Impact of normalization on miRNA microarray expression profiling.
    RNA, 15(3): 493-501. [Abstract] [Full-text]
45. Comparative microarray analysis and pulmonary changes in brown norway rats exposed to ovalbumin and concentrated air particulates.
    Toxicol Sci, 108(1): 207-21. [Abstract] [Full-text]
46. Transition dependency: a gene-gene interaction measure for times series microarray data.
    EURASIP J Bioinform Syst Biol. [Abstract] [Full-text]
47. A nonlinear mixed-effects model for estimating calibration intervals for unknown concentrations in two-color microarray data with spike-ins.
    Stat Appl Genet Mol Biol, 8(1): Article 5. [Abstract] [Full-text]
48. Dimension reduction of microarray data in the presence of a censored survival response: a simulation study.
    Stat Appl Genet Mol Biol, 8(1): Article 4. [Abstract] [Full-text]
49. Sequential analysis for microarray data based on sensitivity and meta-analysis.
    Stat Appl Genet Mol Biol, 8(1): Article 3. [Abstract] [Full-text]
50. Survival analysis with high-dimensional covariates: an application in microarray studies.
    Stat Appl Genet Mol Biol, 8(1): Article 14. [Abstract] [Full-text]
51. Detecting outlier samples in microarray data.
    Stat Appl Genet Mol Biol, 8(1): Article 13. [Abstract] [Full-text]
52. Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel.
    Funct Integr Genomics, 9(1): 59-66. [Abstract] [Full-text]
53. EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.
    BMC Bioinformatics, 10: 50. [Abstract] [Full-text]
54. Comparison of gene expression responses to hypoxia in viviparous (Xiphophorus) and oviparous (Oryzias) fishes using a medaka microarray.
    Comp Biochem Physiol C Toxicol Pharmacol, 149(2): 258-65. [Abstract] [Full-text]
55. Selective detection of live bacteria combining propidium monoazide sample treatment with microarray technology.
    J Microbiol Methods, 76(3): 253-61. [Abstract] [Full-text]
56. A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria.
    J Microbiol Methods, 76(3): 269-77. [Abstract] [Full-text]
57. Independent component analysis of Alzheimer's DNA microarray gene expression data.
    Mol Neurodegener, 4(1): 5. [Abstract] [Full-text]
58. Microarray-based analysis of the lung recovery process after stainless-steel welding fume exposure in Sprague-Dawley rats.
    Inhal Toxicol, 21(4): 347-73. [Abstract] [Full-text]
59. Microarray analysis of the interaction between the aphid Rhopalosiphum padi and host plants reveals both differences and similarities between susceptible and partially resistant barley lines.
    Mol Genet Genomics, 281(3): 233-48. [Abstract] [Full-text]
60. Two-component signal transduction systems in Streptomyces and related organisms studied using DNA comparative microarray analysis.
    Antonie Van Leeuwenhoek, 95(3): 189-206. [Abstract] [Full-text]
61. Quality assessment of microarray data in a multicenter study.
    Diagn Mol Pathol, 18(1): 34-43. [Abstract] [Full-text]
62. Initial surgical experience with a dense cortical microarray in epileptic patients undergoing craniotomy for subdural electrode implantation.
    Neurosurgery, 64(3): 540-5; discussion 545. [Abstract] [Full-text]
63. Microarray profiling of microRNAs expressed in testis tissues of developing primates.
    J Assist Reprod Genet. [Abstract] [Full-text]
64. Microarray analysis reveals similarity between CD8(+)CD28 (-) T cells from young and elderly persons, but not of CD8 (+)CD28 (+) T cells.
    Biogerontology, 10(2): 191-202. [Abstract] [Full-text]
65. Microarray and biochemical analysis of bufalin-induced apoptosis of HL-60 Cells.
    Biotechnol Lett, 31(4): 487-94. [Abstract] [Full-text]

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